Difference between revisions of "Tiso gene 15722"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-388 CPD-388] == * smiles: ** CCCCCCCCCCCCCC[CH]=O * common name: ** pentadecanal * inchi ke...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** transaldolase...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-388 CPD-388] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
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* smiles:
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* direction:
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** CCCCCCCCCCCCCC[CH]=O
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** REVERSIBLE
 
* common name:
 
* common name:
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** pentadecanal
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** ORF
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* inchi key:
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** transaldolase
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** InChIKey=XGQJZNCFDLXSIJ-UHFFFAOYSA-N
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
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** 226.401   
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN66-476-CPD-388/NAD/WATER//CPD-8462/NADH/PROTON.40.]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
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* [[FATTY-ACID-PEROXIDASE-RXN]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 D-sedoheptulose 7-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17601]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_1831]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 2765-11-9
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* RHEA:
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* LIPID_MAPS : LMFA06000083
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=17697 17697]
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** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
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* HMDB : HMDB31078
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P17441 P17441]
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** [http://www.genome.jp/dbget-bin/www_bget?C01948 C01948]
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** [http://www.uniprot.org/uniprot/P17440 P17440]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P37837 P37837]
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** [http://www.chemspider.com/Chemical-Structure.16729.html 16729]
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** [http://www.uniprot.org/uniprot/P45055 P45055]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17302 17302]
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** [http://www.uniprot.org/uniprot/P0A867 P0A867]
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{{#set: smiles=CCCCCCCCCCCCCC[CH]=O}}
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** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
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{{#set: common name=pentadecanal}}
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** [http://www.uniprot.org/uniprot/Q58370 Q58370]
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{{#set: inchi key=InChIKey=XGQJZNCFDLXSIJ-UHFFFAOYSA-N}}
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** [http://www.uniprot.org/uniprot/P34214 P34214]
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{{#set: molecular weight=226.401    }}
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** [http://www.uniprot.org/uniprot/P0A870 P0A870]
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{{#set: consumed by=RXN66-476-CPD-388/NAD/WATER//CPD-8462/NADH/PROTON.40.}}
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** [http://www.uniprot.org/uniprot/P15019 P15019]
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{{#set: produced by=FATTY-ACID-PEROXIDASE-RXN}}
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** [http://www.uniprot.org/uniprot/P53228 P53228]
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** [http://www.uniprot.org/uniprot/P51778 P51778]
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** [http://www.uniprot.org/uniprot/P72797 P72797]
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** [http://www.uniprot.org/uniprot/O04894 O04894]
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** [http://www.uniprot.org/uniprot/P78865 P78865]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: common name=transaldolase}}
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{{#set: ec number=EC-2.2.1.2}}
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{{#set: gene associated=Tiso_gene_17601|Tiso_gene_1831}}
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{{#set: in pathway=P124-PWY|P185-PWY|PWY-5723|PWY-1861|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:29, 18 March 2018

Reaction TRANSALDOL-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • transaldolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-sedoheptulose 7-phosphate[c] + 1 D-glyceraldehyde 3-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-erythrose 4-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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