Difference between revisions of "Tiso gene 15923"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-d-xylulose_5-phosphate_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2006 RXN-2006] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2006 RXN-2006] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 1-deoxy-d-xylulose_5-phosphate_chloroplast
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[CPD-514]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[BENZOYLCOA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 pyruvate[c] '''=>''' 1 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1 CO2[c]
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** 1 3-oxo-3-phenylpropanoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 benzoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17311]]
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* Gene: [[Tiso_gene_16181]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-athaliana]]
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
+
* [[P281-PWY]], 3-phenylpropanoate degradation: [http://metacyc.org/META/NEW-IMAGE?object=P281-PWY P281-PWY]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
+
* [[PWY-481]], ethylbenzene degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-481 PWY-481]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
+
* [[PWY-6458]], benzoyl-CoA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6458 PWY-6458]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
+
* [[PWY-6443]], benzoate biosynthesis I (CoA-dependent, β-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6443 PWY-6443]
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05506 R05506]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=1-deoxy-d-xylulose_5-phosphate_chloroplast}}
+
{{#set: gene associated=Tiso_gene_16181}}
−
{{#set: ec number=EC-2.2.1.7}}
+
{{#set: in pathway=P281-PWY|PWY-481|PWY-6458|PWY-6443}}
−
{{#set: gene associated=Tiso_gene_17311}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=NONMEVIPP-PWY|PWY-6891|PYRIDOXSYN-PWY|PWY-6892|PWY-7560}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:53, 21 March 2018

Reaction RXN-2006

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-oxo-3-phenylpropanoyl-CoA[c] + 1 coenzyme A[c] => 1 acetyl-CoA[c] + 1 benzoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P281-PWY, 3-phenylpropanoate degradation: P281-PWY
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-481, ethylbenzene degradation (anaerobic): PWY-481
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6458, benzoyl-CoA biosynthesis: PWY-6458
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6443, benzoate biosynthesis I (CoA-dependent, β-oxidative): PWY-6443
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15923&oldid=37134"