Difference between revisions of "Tiso gene 15926"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.31-RXN 1.2.1.31-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase *...")
 
(Created page with "Category:Gene == Gene Tiso_gene_15926 == * right end position: ** 4170 * transcription direction: ** POSITIVE * left end position: ** 3126 * centisome position: ** 66.4399...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.31-RXN 1.2.1.31-RXN] ==
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== Gene Tiso_gene_15926 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4170
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** ORF
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* left end position:
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* ec number:
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** 3126
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** [http://enzyme.expasy.org/EC/1.2.1.31 EC-1.2.1.31]
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* centisome position:
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** 66.43996   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.10.2.2-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[ALLYSINE]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[CPD-468]][c] '''+''' 1 [[NADH-P-OR-NOP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H2O[c] '''+''' 1 (S)-2-amino-6-oxohexanoate[c] '''+''' 1 NAD(P)+[c] '''=>''' 2 H+[c] '''+''' 1 L-2-aminoadipate[c] '''+''' 1 NAD(P)H[c]
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* Reaction: [[PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN]]
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** Source: [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-14107]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_6563]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-15816]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_16719]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-15829]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_5425]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-6692]]
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* [[Tiso_gene_5424]]
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* [[PWY-3781]]
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** IN-SILICO_ANNOTATION
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* [[PWY-101]]
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***EC-NUMBER
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* [[PWY-7279]]
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* [[Tiso_gene_6562]]
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* [[PWY-7082]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4170}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12306 12306]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3126}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03103 R03103]
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{{#set: centisome position=66.43996    }}
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* UNIPROT:
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{{#set: reaction associated=1.10.2.2-RXN|PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN|RXN-14107|RXN-15816|RXN-15829}}
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** [http://www.uniprot.org/uniprot/P50113 P50113]
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{{#set: pathway associated=PWY-6692|PWY-3781|PWY-101|PWY-7279|PWY-7082}}
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** [http://www.uniprot.org/uniprot/P07702 P07702]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.2.1.31}}
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{{#set: gene associated=Tiso_gene_6563|Tiso_gene_16719|Tiso_gene_5425|Tiso_gene_5424|Tiso_gene_6562}}
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{{#set: in pathway=LYSINE-DEG1-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:11, 21 March 2018

Gene Tiso_gene_15926

  • right end position:
    • 4170
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3126
  • centisome position:
    • 66.43996
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15926&oldid=40042"