Difference between revisions of "Tiso gene 1684"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoxygenase * ec number: **...")
(Created page with "Category:Gene == Gene Tiso_gene_1684 == * right end position: ** 15239 * transcription direction: ** POSITIVE * left end position: ** 14651 * centisome position: ** 46.896...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] ==
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== Gene Tiso_gene_1684 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 15239
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* common name:
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* transcription direction:
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** lipoxygenase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.13.11.12 EC-1.13.11.12]
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** 14651
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* centisome position:
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** 46.896706   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-2161]]
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** 1 [[LINOLENIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-725]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 α-linolenate[c] '''+''' 1 oxygen[c] '''=>''' 1 13(S)-HPOTE[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[SERINE--TRNA-LIGASE-RXN]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_4463]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***AUTOMATED-NAME-MATCH
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* [[TRNA-CHARGING-PWY]]
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== Pathways  ==
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* [[PWY0-901]]
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* [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410]
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* [[PWY-6281]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
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** '''15''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=15239}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34495 34495]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=14651}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07869 R07869]
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{{#set: centisome position=46.896706    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN0-2161|SERINE--TRNA-LIGASE-RXN}}
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{{#set: common name=lipoxygenase}}
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{{#set: pathway associated=TRNA-CHARGING-PWY|PWY0-901|PWY-6281}}
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{{#set: ec number=EC-1.13.11.12}}
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{{#set: gene associated=Tiso_gene_4463}}
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{{#set: in pathway=PWY-5410|PWY-735}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:35, 21 March 2018

Gene Tiso_gene_1684

  • right end position:
    • 15239
  • transcription direction:
    • POSITIVE
  • left end position:
    • 14651
  • centisome position:
    • 46.896706
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1684&oldid=42528"