Difference between revisions of "Tiso gene 17237"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTSEMIALDEHYDROG-RXN GLUTSEMIALDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** g...")
(Created page with "Category:Gene == Gene Tiso_gene_17237 == * right end position: ** 3684 * transcription direction: ** POSITIVE * left end position: ** 74 * centisome position: ** 1.92859...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTSEMIALDEHYDROG-RXN GLUTSEMIALDEHYDROG-RXN] ==
+
== Gene Tiso_gene_17237 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 3684
−
* common name:
+
* transcription direction:
−
** glutamate-5-semialdehyde_dehydrogenase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/1.2.1.41 EC-1.2.1.41]
+
** 74
 +
* centisome position:
 +
** 1.92859   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[NADPH-DEHYDROGENASE-FLAVIN-RXN]]
−
** 1 [[NADPH]][c] '''+''' 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 NADPH[c] '''+''' 1 γ-L-glutamyl 5-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 phosphate[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 NADP+[c]
+
** Source: [[orthology-esiliculosus]]
−
 
+
* Reaction: [[RXN-12445]]
−
== Genes associated with this reaction  ==
+
** Source: [[annotation-in-silico_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** Assignment: ec-number
−
* [[Tiso_gene_16258]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
== Pathways associated ==
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_16634]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PROSYN-PWY]], L-proline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PROSYN-PWY PROSYN-PWY]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
+
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
+
−
*** [[synechocystis]]
+
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=3684}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19541 19541]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=74}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03313 R03313]
+
{{#set: centisome position=1.92859    }}
−
* UNIPROT:
+
{{#set: reaction associated=NADPH-DEHYDROGENASE-FLAVIN-RXN|RXN-12445}}
−
** [http://www.uniprot.org/uniprot/Q9JUK8 Q9JUK8]
+
−
** [http://www.uniprot.org/uniprot/P45121 P45121]
+
−
** [http://www.uniprot.org/uniprot/P53000 P53000]
+
−
** [http://www.uniprot.org/uniprot/P07004 P07004]
+
−
** [http://www.uniprot.org/uniprot/P17857 P17857]
+
−
** [http://www.uniprot.org/uniprot/P45638 P45638]
+
−
** [http://www.uniprot.org/uniprot/P54885 P54885]
+
−
** [http://www.uniprot.org/uniprot/O04226 O04226]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glutamate-5-semialdehyde_dehydrogenase}}
+
−
{{#set: ec number=EC-1.2.1.41}}
+
−
{{#set: gene associated=Tiso_gene_16258|Tiso_gene_16634}}
+
−
{{#set: in pathway=PWY-6922|PROSYN-PWY|ARGININE-SYN4-PWY|PWY-3341|CITRULBIO-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 21:09, 21 March 2018

Gene Tiso_gene_17237

  • right end position:
    • 3684
  • transcription direction:
    • POSITIVE
  • left end position:
    • 74
  • centisome position:
    • 1.92859
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17237&oldid=46460"