Difference between revisions of "Tiso gene 18748"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9673 RXN-9673] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long_c...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOLO-ACP-SYNTH-RXN HOLO-ACP-SYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4_-phosph...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9673 RXN-9673] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOLO-ACP-SYNTH-RXN HOLO-ACP-SYNTH-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** 4_-phosphopantetheinyl_transferase
−
** long_chain_acyl-_synthetase
+
−
** acyl-_synthetase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/2.7.8.7 EC-2.7.8.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[LINOLEIC_ACID]][c] '''=>''' 1 [[CPD-18]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[apo-ACP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 linoleate[c] '''=>''' 1 linoleoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
+
** 1 an apo-[acyl-carrier protein][c] '''+''' 1 coenzyme A[c] '''=>''' 1 adenosine 3',5'-bisphosphate[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_135]]
+
* Gene: [[Tiso_gene_14278]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_136]]
+
* Gene: [[Tiso_gene_12201]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_348]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4191]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7855]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6000]], γ-linolenate biosynthesis II (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6000 PWY-6000]
+
* [[PWY-6012-1]], acyl carrier protein activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6012-1 PWY-6012-1]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6012]], acyl carrier protein metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6012 PWY-6012]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 62: Line 34:
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33652 33652]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01625 R01625]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PMP8 Q9PMP8]
 +
** [http://www.uniprot.org/uniprot/P24224 P24224]
 +
** [http://www.uniprot.org/uniprot/O84102 O84102]
 +
** [http://www.uniprot.org/uniprot/Q9RQW2 Q9RQW2]
 +
** [http://www.uniprot.org/uniprot/O83800 O83800]
 +
** [http://www.uniprot.org/uniprot/Q9ZCX5 Q9ZCX5]
 +
** [http://www.uniprot.org/uniprot/Q9ZL36 Q9ZL36]
 +
** [http://www.uniprot.org/uniprot/O25488 O25488]
 +
** [http://www.uniprot.org/uniprot/P96618 P96618]
 +
** [http://www.uniprot.org/uniprot/O66995 O66995]
 +
** [http://www.uniprot.org/uniprot/P0A4W8 P0A4W8]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=4_-phosphopantetheinyl_transferase}}
−
{{#set: common name=long_chain_acyl-_synthetase}}
+
{{#set: ec number=EC-2.7.8.7}}
−
{{#set: common name=acyl-_synthetase}}
+
{{#set: gene associated=Tiso_gene_14278|Tiso_gene_12201}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-6012-1|PWY-6012}}
−
{{#set: ec number=EC-6.2.1.3}}
+
−
{{#set: gene associated=Tiso_gene_135|Tiso_gene_136|Tiso_gene_348|Tiso_gene_13394|Tiso_gene_4191|Tiso_gene_7855|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_9394}}
+
−
{{#set: in pathway=PWY-6000}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:48, 21 March 2018

Reaction HOLO-ACP-SYNTH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 4_-phosphopantetheinyl_transferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an apo-[acyl-carrier protein][c] + 1 coenzyme A[c] => 1 adenosine 3',5'-bisphosphate[c] + 1 a holo-[acyl-carrier protein][c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6012-1, acyl carrier protein activation: PWY-6012-1
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6012, acyl carrier protein metabolism: PWY-6012
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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