Difference between revisions of "Tiso gene 18792"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLALD-DEHYDROG-RXN GLYCOLALD-DEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [ht...")
(Created page with "Category:Gene == Gene Tiso_gene_18792 == * right end position: ** 2094 * transcription direction: ** POSITIVE * left end position: ** 1018 * centisome position: ** 36.4352...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLALD-DEHYDROG-RXN GLYCOLALD-DEHYDROG-RXN] ==
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== Gene Tiso_gene_18792 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2094
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.2.1.21 EC-1.2.1.21]
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** POSITIVE
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* left end position:
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** 1018
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* centisome position:
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** 36.43522   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DCTP-PYROPHOSPHATASE-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[GLYCOLALDEHYDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[GLYCOLLATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 NAD+[c] '''+''' 1 glycolaldehyde[c] '''+''' 1 H2O[c] '''=>''' 2 H+[c] '''+''' 1 NADH[c] '''+''' 1 glycolate[c]
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* Reaction: [[DUTP-PYROP-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[NUCLEOTIDE-PYROPHOSPHATASE-RXN]]
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* Gene: [[Tiso_gene_7322]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-synechocystis]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-14139]]
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* [[PWY0-1280]], ethylene glycol degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1280 PWY0-1280]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** Assignment: ec-number
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* [[DARABCATK12-PWY]], D-arabinose degradation I: [http://metacyc.org/META/NEW-IMAGE?object=DARABCATK12-PWY DARABCATK12-PWY]
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* Reaction: [[RXN-14140]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* Category: [[orthology]]
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* Reaction: [[RXN0-383]]
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** Source: [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-384]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-385]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-5107]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-6382]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7206]]
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* [[PWY-7184]]
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* [[PWY-7187]]
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* [[PWY-7821]]
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* [[PWY0-166]]
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* [[PWY-6545]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2094}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20001 20001]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1018}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01333 R01333]
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{{#set: centisome position=36.43522    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=DCTP-PYROPHOSPHATASE-RXN|DUTP-PYROP-RXN|NUCLEOTIDE-PYROPHOSPHATASE-RXN|RXN-14139|RXN-14140|RXN0-383|RXN0-384|RXN0-385|RXN0-5107|RXN0-6382}}
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{{#set: ec number=EC-1.2.1.21}}
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{{#set: pathway associated=PWY-7206|PWY-7184|PWY-7187|PWY-7821|PWY0-166|PWY-6545}}
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{{#set: gene associated=Tiso_gene_7322}}
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{{#set: in pathway=PWY0-1280|DARABCATK12-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 21:23, 21 March 2018

Gene Tiso_gene_18792

  • right end position:
    • 2094
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1018
  • centisome position:
    • 36.43522
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18792&oldid=48360"