Difference between revisions of "Tiso gene 1948"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-CARBOXYLTRANSFER-RXN ACETYL-COA-CARBOXYLTRANSFER-RXN] == * direction: ** LEFT-TO-RIGHT *...")
(Created page with "Category:Gene == Gene Tiso_gene_1948 == * right end position: ** 18684 * transcription direction: ** POSITIVE * left end position: ** 13948 * centisome position: ** 61.436...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-CARBOXYLTRANSFER-RXN ACETYL-COA-CARBOXYLTRANSFER-RXN] ==
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== Gene Tiso_gene_1948 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 18684
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/6.4.1.2 EC-6.4.1.2]
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** POSITIVE
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* left end position:
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** 13948
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* centisome position:
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** 61.436813   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[14-LACTONASE-RXN]]
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** 1 [[ACETYL-COA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 acetyl-CoA[c] '''+''' 1 ATP[c] '''+''' 1 hydrogencarbonate[c] '''=>''' 1 phosphate[c] '''+''' 1 malonyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
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* Reaction: [[GALACTONOLACTONASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[GLUCONOLACT-RXN]]
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* Gene: [[Tiso_gene_2812]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_3800]]
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* Reaction: [[RXN-8783]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5029]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_7965]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6722]], candicidin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6722 PWY-6722]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5743]], 3-hydroxypropanoate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5743 PWY-5743]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5744]], glyoxylate assimilation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5744 PWY-5744]
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** '''2''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
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** '''8''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6679]], jadomycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6679 PWY-6679]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-2221]]
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* [[PWY-7165]]
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* [[NPGLUCAT-PWY]]
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* [[GLUCOSE1PMETAB-PWY]]
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* [[PWY3DJ-35471]]
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* [[GALDEG-PWY]]
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* [[PWY-5530]]
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* [[DHGLUCONATE-PYR-CAT-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=18684}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11308 11308]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=13948}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00742 R00742]
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{{#set: centisome position=61.436813    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=14-LACTONASE-RXN|GALACTONOLACTONASE-RXN|GLUCONOLACT-RXN|RXN-8783}}
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{{#set: ec number=EC-6.4.1.2}}
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{{#set: pathway associated=PWY-2221|PWY-7165|NPGLUCAT-PWY|GLUCOSE1PMETAB-PWY|PWY3DJ-35471|GALDEG-PWY|PWY-5530|DHGLUCONATE-PYR-CAT-PWY}}
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{{#set: gene associated=Tiso_gene_2812|Tiso_gene_3800|Tiso_gene_5029|Tiso_gene_7965}}
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{{#set: in pathway=PWY-7388|PWY-6722|PWY-5743|PWY-5744|PWY-5789|PWY-6679|PWY-4381}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|manual-primary_network|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:18, 21 March 2018

Gene Tiso_gene_1948

  • right end position:
    • 18684
  • transcription direction:
    • POSITIVE
  • left end position:
    • 13948
  • centisome position:
    • 61.436813
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1948&oldid=40810"