Difference between revisions of "Tiso gene 20218"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
(Created page with "Category:Gene == Gene Tiso_gene_20218 == * right end position: ** 1571 * transcription direction: ** NEGATIVE * left end position: ** 66 * centisome position: ** 4.0268455...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
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== Gene Tiso_gene_20218 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1571
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* common name:
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* transcription direction:
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** Naringenin chalcone isomerase
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** NEGATIVE
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** atp-dependent_rna_helicase_dhx30-like
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* left end position:
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* ec number:
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** 66
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** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
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* centisome position:
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** 4.0268455   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PYRROLINECARBREDUCT-RXN]]
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** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
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* With common name(s):
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** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_13414]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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* Gene: [[Tiso_gene_9838]]
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* Reaction: [[RXN66-546]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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** '''5''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PROSYN-PWY]]
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* [[ARG-PRO-PWY]]
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* [[PWY-6344]]
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* [[PWY-4981]]
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* [[PWY-3341]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=1571}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: left end position=66}}
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** [http://www.uniprot.org/uniprot/P11650 P11650]
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{{#set: centisome position=4.0268455    }}
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** [http://www.uniprot.org/uniprot/P11651 P11651]
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{{#set: reaction associated=PYRROLINECARBREDUCT-RXN|RXN66-546}}
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** [http://www.uniprot.org/uniprot/P41088 P41088]
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{{#set: pathway associated=PROSYN-PWY|ARG-PRO-PWY|PWY-6344|PWY-4981|PWY-3341}}
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** [http://www.uniprot.org/uniprot/P14298 P14298]
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** [http://www.uniprot.org/uniprot/Q42925 Q42925]
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** [http://www.uniprot.org/uniprot/Q42926 Q42926]
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** [http://www.uniprot.org/uniprot/Q08704 Q08704]
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** [http://www.uniprot.org/uniprot/P28012 P28012]
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** [http://www.uniprot.org/uniprot/P41089 P41089]
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** [http://www.uniprot.org/uniprot/O81980 O81980]
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** [http://www.uniprot.org/uniprot/O22604 O22604]
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** [http://www.uniprot.org/uniprot/O22651 O22651]
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** [http://www.uniprot.org/uniprot/Q43754 Q43754]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Naringenin chalcone isomerase}}
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{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
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{{#set: ec number=EC-5.5.1.6}}
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{{#set: gene associated=Tiso_gene_13414|Tiso_gene_9838}}
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{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:07, 21 March 2018

Gene Tiso_gene_20218

  • right end position:
    • 1571
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 66
  • centisome position:
    • 4.0268455
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20218&oldid=39616"