Difference between revisions of "Tiso gene 20238"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.18.1.2-RXN 1.18.1.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ferredoxin--nadp_embr...")
 
(Created page with "Category:Gene == Gene Tiso_gene_20238 == * right end position: ** 1555 * transcription direction: ** NEGATIVE * left end position: ** 620 * centisome position: ** 38.41388...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.18.1.2-RXN 1.18.1.2-RXN] ==
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== Gene Tiso_gene_20238 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1555
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* common name:
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* transcription direction:
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** ferredoxin--nadp_embryochloroplastic
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** NEGATIVE
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** ferredoxin--nadp_root_isozyme_chloroplastic
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* left end position:
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* ec number:
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** 620
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** [http://enzyme.expasy.org/EC/1.18.1.2 EC-1.18.1.2]
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* centisome position:
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** 38.41388   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[6PGLUCONDEHYDROG-RXN]]
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** 1 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][e] '''+''' 1 [[NADP]][c] '''=>''' 1 [[NADPH]][c] '''+''' 2 [[Oxidized-ferredoxins]][e]
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** Source: [[orthology-athaliana]]
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* With common name(s):
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** Source: [[orthology-athaliana]]
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** 1 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[e] '''+''' 1 NADP+[c] '''=>''' 1 NADPH[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[e]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-creinhardtii]]
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-9952]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_20054]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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== Pathways associated ==
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** EXPERIMENTAL_ANNOTATION
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* [[P122-PWY]]
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***EC-NUMBER
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* [[OXIDATIVEPENT-PWY]]
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* [[Tiso_gene_19031]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17381]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17170]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_20055]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_20168]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7230]], ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7230 PWY-7230]
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** '''1''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-101]], photosynthesis light reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-101 PWY-101]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=1555}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01195 R01195]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=620}}
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{{#set: common name=ferredoxin--nadp_embryochloroplastic}}
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{{#set: centisome position=38.41388    }}
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{{#set: common name=ferredoxin--nadp_root_isozyme_chloroplastic}}
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{{#set: reaction associated=6PGLUCONDEHYDROG-RXN|RXN-9952}}
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{{#set: ec number=EC-1.18.1.2}}
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{{#set: pathway associated=P122-PWY|OXIDATIVEPENT-PWY}}
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{{#set: gene associated=Tiso_gene_20054|Tiso_gene_19031|Tiso_gene_17381|Tiso_gene_17170|Tiso_gene_20055|Tiso_gene_20168}}
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{{#set: in pathway=PWY-7230|PWY-101}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:13, 21 March 2018

Gene Tiso_gene_20238

  • right end position:
    • 1555
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 620
  • centisome position:
    • 38.41388
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20238&oldid=40293"