Difference between revisions of "Tiso gene 20412"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SEROTONIN SEROTONIN] == * smiles: ** C1(=C(CC[N+])C2(C=C(O)C=CC(N1)=2)) * inchi key: ** InChIKe...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** beta-glucosidase-like_...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SEROTONIN SEROTONIN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] ==
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* smiles:
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* direction:
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** C1(=C(CC[N+])C2(C=C(O)C=CC(N1)=2))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=QZAYGJVTTNCVMB-UHFFFAOYSA-O
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* common name:
 
* common name:
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** serotonin
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** ORF
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* molecular weight:
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** beta-glucosidase-like_chloroplastic
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** 177.225   
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** beta_glucosidase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
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** 5-HT
 
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** hydroxytryptamine
 
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** 5-hydroxytryptamine
 
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** 3-(2-aminoethyl)-1H-indol-5-ol
 
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** enteramine
 
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** thrombocytin
 
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** thrombotonin
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-10777]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[CPD-7417]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-7418]][c] '''+''' 1 [[Glucopyranose]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 cis-coumarinic acid-β-D-glucoside[c] '''+''' 1 H2O[c] '''=>''' 1 coumarinate[c] '''+''' 1 D-glucopyranose[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_5836]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10001]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15067]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6188]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13306]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_507]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_2843]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6187]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15066]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6497]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_8669]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3467]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6007]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2344]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_13305]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5176]], coumarin biosynthesis (via 2-coumarate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* CAS : 50-67-9
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31223 31223]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=4048638 4048638]
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* LIGAND-RXN:
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* HMDB : HMDB00259
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** [http://www.genome.jp/dbget-bin/www_bget?R04998 R04998]
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00780 C00780]
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{{#set: common name=ORF}}
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* CHEMSPIDER:
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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** [http://www.chemspider.com/Chemical-Structure.3264617.html 3264617]
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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* CHEBI:
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{{#set: common name=beta_glucosidase}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=350546 350546]
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{{#set: ec number=EC-3.2.1.21}}
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* METABOLIGHTS : MTBLC350546
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{{#set: gene associated=Tiso_gene_5836|Tiso_gene_10001|Tiso_gene_15067|Tiso_gene_6188|Tiso_gene_13306|Tiso_gene_507|Tiso_gene_2843|Tiso_gene_6187|Tiso_gene_15066|Tiso_gene_6497|Tiso_gene_8669|Tiso_gene_3467|Tiso_gene_6007|Tiso_gene_2344|Tiso_gene_13305}}
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{{#set: smiles=C1(=C(CC[N+])C2(C=C(O)C=CC(N1)=2))}}
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{{#set: in pathway=PWY-5176}}
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{{#set: inchi key=InChIKey=QZAYGJVTTNCVMB-UHFFFAOYSA-O}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=serotonin}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: molecular weight=177.225    }}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: common name=5-HT|hydroxytryptamine|5-hydroxytryptamine|3-(2-aminoethyl)-1H-indol-5-ol|enteramine|thrombocytin|thrombotonin}}
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{{#set: reconstruction category=annotation}}
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{{#set: consumed by=RXN-10777}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 17:53, 10 January 2018

Reaction RXN-8036

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • beta-glucosidase-like_chloroplastic
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 cis-coumarinic acid-β-D-glucoside[c] + 1 H2O[c] => 1 coumarinate[c] + 1 D-glucopyranose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5176, coumarin biosynthesis (via 2-coumarate): PWY-5176
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links








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