Difference between revisions of "Tiso gene 20412"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** beta-glucosidase-like_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOISOCAPROATE-RXN KETOISOCAPROATE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-methy...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOISOCAPROATE-RXN KETOISOCAPROATE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
−
** beta-glucosidase-like_chloroplastic
+
** 2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial
−
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
+
−
** beta_glucosidase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
+
** [http://enzyme.expasy.org/EC/1.2.4.4 EC-1.2.4.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-7417]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-7418]][c] '''+''' 1 [[Glucopyranose]][c]
+
** 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[BCAA-dehydrogenase-3MB-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 cis-coumarinic acid-β-D-glucoside[c] '''+''' 1 H2O[c] '''=>''' 1 coumarinate[c] '''+''' 1 D-glucopyranose[c]
+
** 1 an [apo BCAA dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''+''' 1 4-methyl-2-oxopentanoate[c] '''+''' 1 H+[c] '''=>''' 1 a [apo BCAA dehydrogenase E2 protein] N6-S-[3-methylbutanoyl]dihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5836]]
+
* [[Tiso_gene_18084]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10001]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15067]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6188]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13306]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_507]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_2843]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6187]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15066]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6497]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8669]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3467]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6007]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2344]]
+
−
** [[pantograph]]-[[athaliana]]
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_13305]]
+
* [[Tiso_gene_3260]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
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***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5176]], coumarin biosynthesis (via 2-coumarate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
* Category: [[annotation]]
−
* [[annotation]]:
+
** Source: [[annotation-experimental_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[experimental_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31223 31223]
+
** [http://www.uniprot.org/uniprot/P21839 P21839]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/P21953 P21953]
−
** [http://www.genome.jp/dbget-bin/www_bget?R04998 R04998]
+
** [http://www.uniprot.org/uniprot/P37940 P37940]
 +
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
 +
** [http://www.uniprot.org/uniprot/P37941 P37941]
 +
** [http://www.uniprot.org/uniprot/P11178 P11178]
 +
** [http://www.uniprot.org/uniprot/P12694 P12694]
 +
** [http://www.uniprot.org/uniprot/P09061 P09061]
 +
** [http://www.uniprot.org/uniprot/P09060 P09060]
 +
** [http://www.uniprot.org/uniprot/P11960 P11960]
 +
** [http://www.uniprot.org/uniprot/O84344 O84344]
 +
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
 +
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
 +
** [http://www.uniprot.org/uniprot/P35738 P35738]
 +
** [http://www.uniprot.org/uniprot/P50136 P50136]
 +
** [http://www.uniprot.org/uniprot/O48615 O48615]
 +
** [http://www.uniprot.org/uniprot/O03849 O03849]
 +
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 +
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 +
** [http://www.uniprot.org/uniprot/O82450 O82450]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=4-methyl-2-oxopentanoate dehydrogenase (lipoamide)}}
−
{{#set: common name=beta-glucosidase-like_chloroplastic}}
+
{{#set: common name=2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial}}
−
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
+
{{#set: ec number=EC-1.2.4.4}}
−
{{#set: common name=beta_glucosidase}}
+
{{#set: gene associated=Tiso_gene_18084|Tiso_gene_3260}}
−
{{#set: ec number=EC-3.2.1.21}}
+
{{#set: in pathway=}}
−
{{#set: gene associated=Tiso_gene_5836|Tiso_gene_10001|Tiso_gene_15067|Tiso_gene_6188|Tiso_gene_13306|Tiso_gene_507|Tiso_gene_2843|Tiso_gene_6187|Tiso_gene_15066|Tiso_gene_6497|Tiso_gene_8669|Tiso_gene_3467|Tiso_gene_6007|Tiso_gene_2344|Tiso_gene_13305}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: in pathway=PWY-5176}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 19:38, 18 March 2018

Reaction KETOISOCAPROATE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
    • 2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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