Difference between revisions of "Tiso gene 20412"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** beta-glucosidase-like_...")
(Created page with "Category:Gene == Gene Tiso_gene_20412 == * right end position: ** 325 * transcription direction: ** POSITIVE * left end position: ** 2 * centisome position: ** 0.14430015...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] ==
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== Gene Tiso_gene_20412 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 325
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** beta-glucosidase-like_chloroplastic
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* left end position:
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** 2
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** beta_glucosidase
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* centisome position:
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* ec number:
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** 0.14430015   
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[6PGLUCONOLACT-RXN]]
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** 1 [[CPD-7417]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-7418]][c] '''+''' 1 [[Glucopyranose]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 cis-coumarinic acid-β-D-glucoside[c] '''+''' 1 H2O[c] '''=>''' 1 coumarinate[c] '''+''' 1 D-glucopyranose[c]
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== Pathways associated ==
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* [[P122-PWY]]
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== Genes associated with this reaction  ==
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* [[RUMP-PWY]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[OXIDATIVEPENT-PWY]]
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* [[Tiso_gene_5836]]
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* [[GLYCOLYSIS-E-D]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10001]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15067]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6188]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13306]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_507]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_2843]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6187]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15066]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6497]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_8669]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3467]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6007]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2344]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_13305]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-5176]], coumarin biosynthesis (via 2-coumarate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=325}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31223 31223]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04998 R04998]
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{{#set: centisome position=0.14430015    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=6PGLUCONOLACT-RXN}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: common name=beta_glucosidase}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: gene associated=Tiso_gene_5836|Tiso_gene_10001|Tiso_gene_15067|Tiso_gene_6188|Tiso_gene_13306|Tiso_gene_507|Tiso_gene_2843|Tiso_gene_6187|Tiso_gene_15066|Tiso_gene_6497|Tiso_gene_8669|Tiso_gene_3467|Tiso_gene_6007|Tiso_gene_2344|Tiso_gene_13305}}
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{{#set: in pathway=PWY-5176}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:57, 21 March 2018

Gene Tiso_gene_20412

  • right end position:
    • 325
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2
  • centisome position:
    • 0.14430015
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20412&oldid=44919"