Difference between revisions of "Tiso gene 2485"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11246 RXN-11246] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Gene == Gene Tiso_gene_2485 == * right end position: ** 5826 * transcription direction: ** NEGATIVE * left end position: ** 3231 * centisome position: ** 16.80362...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11246 RXN-11246] ==
+
== Gene Tiso_gene_2485 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 5826
−
* common name:
+
* transcription direction:
−
** thiolase
+
** NEGATIVE
−
** acetyl-_c-acetyltransferase
+
* left end position:
−
** 3-ketoacyl-_thiolase
+
** 3231
−
* ec number:
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
** 16.80362   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ARGSUCCINLYA-RXN]]
−
** 1 [[CPD-10600]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-201]][c] '''+''' 1 [[ACETYL-COA]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 4-hydroxybenzoyl-acetyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 4-hydroxybenzoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_3856]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10116]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3855]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15327]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17451]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-22]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[PWY-5154]]
 +
* [[PWY-5]]
 +
* [[ARGSYN-PWY]]
 +
* [[PWY-4984]]
 +
* [[ARGSYNBSUB-PWY]]
 +
* [[PWY-4983]]
 +
* [[PWY-7400]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=5826}}
−
{{#set: common name=thiolase}}
+
{{#set: transcription direction=NEGATIVE}}
−
{{#set: common name=acetyl-_c-acetyltransferase}}
+
{{#set: left end position=3231}}
−
{{#set: common name=3-ketoacyl-_thiolase}}
+
{{#set: centisome position=16.80362    }}
−
{{#set: ec number=EC-2.3.1.16}}
+
{{#set: reaction associated=ARGSUCCINLYA-RXN|RXN-22}}
−
{{#set: gene associated=Tiso_gene_3856|Tiso_gene_10116|Tiso_gene_3855|Tiso_gene_15327|Tiso_gene_17451}}
+
{{#set: pathway associated=PWY-5154|PWY-5|ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4983|PWY-7400}}
−
{{#set: in pathway=PWY-6435}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 21:22, 21 March 2018

Gene Tiso_gene_2485

  • right end position:
    • 5826
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3231
  • centisome position:
    • 16.80362
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2485&oldid=48244"