Difference between revisions of "Tiso gene 2920"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.18-RXN 3.2.1.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** sialidase ** neuramid...")
(Created page with "Category:Gene == Gene Tiso_gene_2920 == * right end position: ** 9894 * transcription direction: ** POSITIVE * left end position: ** 8114 * centisome position: ** 45.12792...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.18-RXN 3.2.1.18-RXN] ==
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== Gene Tiso_gene_2920 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9894
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* common name:
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* transcription direction:
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** sialidase
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** POSITIVE
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** neuramidase
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* left end position:
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* ec number:
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** 8114
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** [http://enzyme.expasy.org/EC/3.2.1.18 EC-3.2.1.18]
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* centisome position:
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** 45.12792   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3-ISOPROPYLMALDEHYDROG-RXN]]
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** 1 [[Sialyloligosaccharides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[N-ACETYLNEURAMINATE]][c] '''+''' 1 [[Oligosaccharides]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a sialyloligosaccharide[c] '''+''' 1 H2O[c] '''=>''' 1 N-acetylneuraminate[c] '''+''' 1 an oligosaccharide[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[IMDH]]
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* [[Tiso_gene_9616]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-13158]]
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_18808]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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* Reaction: [[RXN-14986]]
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* [[Tiso_gene_18807]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_17759]]
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* Reaction: [[RXN-18200]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_17758]]
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* Reaction: [[RXN-18202]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-18204]]
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== Reconstruction information  ==
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** Source: [[annotation-experimental_annotation]]
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* Category: [[annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-in-silico_annotation]]
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* Reaction: [[RXN-18206]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
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* Reaction: [[RXN-18208]]
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
* Reaction: [[RXN-18210]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7745]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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* Reaction: [[RXNQT-4165]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXNQT-4168]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXNQT-4171]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXNQT-4174]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXNQT-4178]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWYQT-4450]]
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* [[PWY-7396]]
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* [[PWY-5101]]
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* [[LEUSYN-PWY]]
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* [[PWY-6871]]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: right end position=9894}}
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** [http://www.uniprot.org/uniprot/P37060 P37060]
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{{#set: transcription direction=POSITIVE}}
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** [http://www.uniprot.org/uniprot/P15698 P15698]
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{{#set: left end position=8114}}
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** [http://www.uniprot.org/uniprot/P18269 P18269]
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{{#set: centisome position=45.12792    }}
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** [http://www.uniprot.org/uniprot/Q02834 Q02834]
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{{#set: reaction associated=3-ISOPROPYLMALDEHYDROG-RXN|IMDH|RXN-13158|RXN-14986|RXN-18200|RXN-18202|RXN-18204|RXN-18206|RXN-18208|RXN-18210|RXN-7745|RXNQT-4165|RXNQT-4168|RXNQT-4171|RXNQT-4174|RXNQT-4178}}
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** [http://www.uniprot.org/uniprot/P16199 P16199]
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{{#set: pathway associated=PWYQT-4450|PWY-7396|PWY-5101|LEUSYN-PWY|PWY-6871}}
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** [http://www.uniprot.org/uniprot/Q64627 Q64627]
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** [http://www.uniprot.org/uniprot/Q03625 Q03625]
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** [http://www.uniprot.org/uniprot/P67907 P67907]
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** [http://www.uniprot.org/uniprot/P67923 P67923]
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** [http://www.uniprot.org/uniprot/P16207 P16207]
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** [http://www.uniprot.org/uniprot/P16205 P16205]
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** [http://www.uniprot.org/uniprot/P16201 P16201]
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** [http://www.uniprot.org/uniprot/P16203 P16203]
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** [http://www.uniprot.org/uniprot/P16191 P16191]
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** [http://www.uniprot.org/uniprot/Q59310 Q59310]
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** [http://www.uniprot.org/uniprot/P16195 P16195]
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** [http://www.uniprot.org/uniprot/P31206 P31206]
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** [http://www.uniprot.org/uniprot/P77848 P77848]
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** [http://www.uniprot.org/uniprot/P23253 P23253]
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** [http://www.uniprot.org/uniprot/Q67055 Q67055]
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** [http://www.uniprot.org/uniprot/P29767 P29767]
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** [http://www.uniprot.org/uniprot/Q9R5J8 Q9R5J8]
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** [http://www.uniprot.org/uniprot/P03473 P03473]
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** [http://www.uniprot.org/uniprot/P03474 P03474]
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** [http://www.uniprot.org/uniprot/P03472 P03472]
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** [http://www.uniprot.org/uniprot/P27907 P27907]
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** [http://www.uniprot.org/uniprot/P03478 P03478]
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** [http://www.uniprot.org/uniprot/Q7LZZ6 Q7LZZ6]
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** [http://www.uniprot.org/uniprot/P10481 P10481]
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** [http://www.uniprot.org/uniprot/Q59164 Q59164]
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** [http://www.uniprot.org/uniprot/Q90021 Q90021]
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** [http://www.uniprot.org/uniprot/Q59311 Q59311]
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** [http://www.uniprot.org/uniprot/P62575 P62575]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=sialidase}}
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{{#set: common name=neuramidase}}
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{{#set: ec number=EC-3.2.1.18}}
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{{#set: gene associated=Tiso_gene_9616|Tiso_gene_18808|Tiso_gene_18807|Tiso_gene_17759|Tiso_gene_17758}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:42, 21 March 2018

Gene Tiso_gene_2920

  • right end position:
    • 9894
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8114
  • centisome position:
    • 45.12792
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2920&oldid=43355"