Difference between revisions of "Tiso gene 3527"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] == * direction: ** LEFT-TO-RIG...")
 
(Created page with "Category:Gene == Gene Tiso_gene_3527 == * right end position: ** 6319 * transcription direction: ** POSITIVE * left end position: ** 5150 * centisome position: ** 31.20644...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] ==
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== Gene Tiso_gene_3527 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6319
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* common name:
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* transcription direction:
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** nitrite_reductase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.7.7.1 EC-1.7.7.1]
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** 5150
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* centisome position:
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** 31.206448   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PHOSGLYPHOS-RXN]]
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** 8 [[PROTON]][c] '''+''' 6 [[Reduced-ferredoxins]][c] '''+''' 1 [[NITRITE]][c] '''=>''' 2 [[WATER]][c] '''+''' 6 [[Oxidized-ferredoxins]][c] '''+''' 1 [[AMMONIUM]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 8 H+[c] '''+''' 6 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 nitrite[c] '''=>''' 2 H2O[c] '''+''' 6 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 ammonium[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_7919]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-1042]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY66-399]]
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***EC-NUMBER
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* [[GLUCONEO-PWY]]
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** [[pantograph]]-[[athaliana]]
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* [[SUCSYN-PWY]]
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** [[pantograph]]-[[athaliana]]
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* [[PWY-6901]]
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** [[pantograph]]-[[synechocystis]]
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* [[P124-PWY]]
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** [[pantograph]]-[[esiliculosus]]
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* [[GLYCOLYSIS]]
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== Pathways ==
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* [[PWY-6886]]
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* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
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* [[CALVIN-PWY]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
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* [[P122-PWY]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[P185-PWY]]
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== Reconstruction information  ==
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* [[PWY-5484]]
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* [[orthology]]:
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* [[PWY-7003]]
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=6319}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00790 R00790]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=5150}}
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{{#set: common name=nitrite_reductase}}
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{{#set: centisome position=31.206448    }}
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{{#set: ec number=EC-1.7.7.1}}
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{{#set: reaction associated=PHOSGLYPHOS-RXN}}
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{{#set: gene associated=Tiso_gene_7919}}
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{{#set: pathway associated=PWY-1042|PWY66-399|GLUCONEO-PWY|SUCSYN-PWY|PWY-6901|P124-PWY|GLYCOLYSIS|PWY-6886|CALVIN-PWY|ANAGLYCOLYSIS-PWY|P122-PWY|P185-PWY|PWY-5484|PWY-7003}}
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{{#set: in pathway=PWY-381|PWY490-3}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:50, 21 March 2018

Gene Tiso_gene_3527

  • right end position:
    • 6319
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5150
  • centisome position:
    • 31.206448
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3527&oldid=44075"