Difference between revisions of "Tiso gene 5171"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN] == * direction: ** LEF...")
(Created page with "Category:Gene == Gene Tiso_gene_5171 == * right end position: ** 6423 * transcription direction: ** NEGATIVE * left end position: ** 2085 * centisome position: ** 15.09010...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN] ==
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== Gene Tiso_gene_5171 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6423
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* common name:
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* transcription direction:
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** magnesium-protoporphyrin_o-methyltransferase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.1.1.11 EC-2.1.1.11]
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** 2085
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* centisome position:
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** 15.090106   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[NADH-DEHYDROG-A-RXN]]
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** 1 [[MG-PROTOPORPHYRIN]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[MG-PROTOPORPHYRIN-MONOMETHYL-ESTER]][c]
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* With common name(s):
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** 1 Mg-protoporphyrin[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 magnesium-protoporphyrin IX 13-monomethyl ester[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_19451]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways ==
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== Pathways associated ==
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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* [[PWY-6692]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-3781]]
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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* [[PWY-5083]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-1334]]
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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* [[PWY0-1335]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4302]]
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6423}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17809 17809]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2085}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04237 R04237]
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{{#set: centisome position=15.090106    }}
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* UNIPROT:
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{{#set: reaction associated=NADH-DEHYDROG-A-RXN}}
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** [http://www.uniprot.org/uniprot/P26162 P26162]
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{{#set: pathway associated=PWY-6692|PWY-3781|PWY-5083|PWY0-1334|PWY0-1335|PWY-4302}}
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** [http://www.uniprot.org/uniprot/Q9RFD7 Q9RFD7]
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** [http://www.uniprot.org/uniprot/Q9RFD5 Q9RFD5]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=magnesium-protoporphyrin_o-methyltransferase}}
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{{#set: ec number=EC-2.1.1.11}}
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{{#set: gene associated=Tiso_gene_19451}}
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{{#set: in pathway=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:06, 21 March 2018

Gene Tiso_gene_5171

  • right end position:
    • 6423
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2085
  • centisome position:
    • 15.090106
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5171&oldid=45931"