Difference between revisions of "Tiso gene 5173"

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(Created page with "Category:Gene == Gene Tiso_gene_4685 == * left end position: ** 2619 * transcription direction: ** POSITIVE * right end position: ** 8084 * centisome position: ** 18.03346...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9652 RXN-9652] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase ** polyket...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_4685 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9652 RXN-9652] ==
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* left end position:
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* direction:
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** 2619
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** 3-oxoacyl-synthase
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* right end position:
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** polyketide_synthase
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** 8084
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 18.033464   
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[6.3.4.16-RXN]]
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* With identifiers:
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** [[pantograph]]-[[esiliculosus]]
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** 1 [[Decanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-dodecanoyl-ACPs]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[CARBPSYN-RXN]]
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* With common name(s):
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** experimental_annotation
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** 1 a decanoyl-[acp][c] '''+''' 1 malonyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 a 3-oxo-dodecanoyl-[acp][c] '''+''' 1 coenzyme A[c] '''+''' 1 CO2[c]
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***automated-name-match
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** [[pantograph]]-[[esiliculosus]]
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== Genes associated with this reaction  ==
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* [[GLUTAMIN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** experimental_annotation
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* Gene: [[Tiso_gene_136]]
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***automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[RXN-13202]]
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* Gene: [[Tiso_gene_15991]]
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** in-silico_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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* Gene: [[Tiso_gene_14485]]
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** experimental_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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* Gene: [[Tiso_gene_10876]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-14196]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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* Gene: [[Tiso_gene_135]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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* Gene: [[Tiso_gene_500]]
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* [[RXN-16909]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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* Gene: [[Tiso_gene_19302]]
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** experimental_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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* Gene: [[Tiso_gene_13394]]
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* [[RXN-16910]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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* Gene: [[Tiso_gene_5939]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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== Pathways associated ==
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-4984]]
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*** Assignment: EC-NUMBER
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* [[GLUTAMINDEG-PWY]]
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== Pathways ==
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* [[ARGSYN-PWY]]
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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* [[PWY-5154]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-7790]]
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== Reconstruction information  ==
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* [[ARGSYNBSUB-PWY]]
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* Category: [[orthology]]
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* [[PWY-7693]]
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** Source: [[orthology-esiliculosus]]
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* [[PWY-7400]]
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*** Tool: [[pantograph]]
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* [[PWY-7791]]
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* Category: [[annotation]]
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* [[PWY-5686]]
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** Source: [[annotation-in-silico_annotation]]
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* [[CITRULBIO-PWY]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2619}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: right end position=8084}}
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{{#set: common name=polyketide_synthase}}
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{{#set: centisome position=18.033464    }}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: reaction associated=6.3.4.16-RXN|CARBPSYN-RXN|GLUTAMIN-RXN|RXN-13202|RXN-14196|RXN-16909|RXN-16910}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: pathway associated=PWY-4984|GLUTAMINDEG-PWY|ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7693|PWY-7400|PWY-7791|PWY-5686|CITRULBIO-PWY}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_15991|Tiso_gene_14485|Tiso_gene_10876|Tiso_gene_135|Tiso_gene_500|Tiso_gene_19302|Tiso_gene_13394|Tiso_gene_5939}}
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{{#set: in pathway=PWY-5994}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:59, 21 March 2018

Reaction RXN-9652

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5173&oldid=37920"