Difference between revisions of "Tiso gene 5173"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] == * direction: ** REVERSIBLE * common name: ** dimethylglycine_dehydrogenase **...")
 
(Created page with "Category:Gene == Gene Tiso_gene_5173 == * right end position: ** 11125 * transcription direction: ** POSITIVE * left end position: ** 9232 * centisome position: ** 66.8162...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] ==
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== Gene Tiso_gene_5173 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 11125
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* common name:
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* transcription direction:
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** dimethylglycine_dehydrogenase
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** POSITIVE
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** aminomethyltransferase
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* left end position:
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** glycine_cleavage_t-protein_c-terminal_barrel_domain
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** 9232
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** sarcosine_dehydrogenase
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* centisome position:
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* ec number:
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** 66.81624   
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** [http://enzyme.expasy.org/EC/2.1.2.10 EC-2.1.2.10]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-10642]]
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** 1 [[THF-GLU-N]][c] '''+''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''<=>''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[AMMONIUM]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a tetrahydrofolate[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''<=>''' 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine[c] '''+''' 1 ammonium[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-creinhardtii]]
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* [[Tiso_gene_15700]]
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* Reaction: [[UROGENDECARBOX-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14788]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_17287]]
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** Source: [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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** Source: [[orthology-creinhardtii]]
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** EXPERIMENTAL_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[HEMESYN2-PWY]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY0-1415]]
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* [[Tiso_gene_6882]]
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* [[PWY-7159]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-5531]]
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* [[Tiso_gene_2717]]
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* [[CHLOROPHYLL-SYN]]
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** IN-SILICO_ANNOTATION
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* [[PWY-7766]]
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***EC-NUMBER
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* [[HEME-BIOSYNTHESIS-II]]
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* [[Tiso_gene_19389]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=11125}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=9232}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
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{{#set: centisome position=66.81624    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-10642|UROGENDECARBOX-RXN}}
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** [http://www.uniprot.org/uniprot/P25285 P25285]
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{{#set: pathway associated=HEMESYN2-PWY|PWY0-1415|PWY-7159|PWY-5531|CHLOROPHYLL-SYN|PWY-7766|HEME-BIOSYNTHESIS-II}}
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** [http://www.uniprot.org/uniprot/P28337 P28337]
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** [http://www.uniprot.org/uniprot/P27248 P27248]
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** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
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** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
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** [http://www.uniprot.org/uniprot/P48728 P48728]
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** [http://www.uniprot.org/uniprot/P49364 P49364]
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** [http://www.uniprot.org/uniprot/P49095 P49095]
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** [http://www.uniprot.org/uniprot/P49363 P49363]
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** [http://www.uniprot.org/uniprot/P54260 P54260]
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** [http://www.uniprot.org/uniprot/P49361 P49361]
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** [http://www.uniprot.org/uniprot/P49362 P49362]
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** [http://www.uniprot.org/uniprot/O49954 O49954]
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** [http://www.uniprot.org/uniprot/P93256 P93256]
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** [http://www.uniprot.org/uniprot/O32955 O32955]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=dimethylglycine_dehydrogenase}}
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{{#set: common name=aminomethyltransferase}}
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{{#set: common name=glycine_cleavage_t-protein_c-terminal_barrel_domain}}
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{{#set: common name=sarcosine_dehydrogenase}}
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{{#set: ec number=EC-2.1.2.10}}
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{{#set: gene associated=Tiso_gene_15700|Tiso_gene_14788|Tiso_gene_17287|Tiso_gene_6882|Tiso_gene_2717|Tiso_gene_19389}}
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{{#set: in pathway=GLYCLEAV-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:17, 21 March 2018

Gene Tiso_gene_5173

  • right end position:
    • 11125
  • transcription direction:
    • POSITIVE
  • left end position:
    • 9232
  • centisome position:
    • 66.81624
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5173&oldid=47435"