Difference between revisions of "Tiso gene 5619"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.21-RXN 3.2.1.21-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like...")
(Created page with "Category:Gene == Gene Tiso_gene_5619 == * right end position: ** 3425 * transcription direction: ** POSITIVE * left end position: ** 29 * centisome position: ** 0.22071695...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.21-RXN 3.2.1.21-RXN] ==
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== Gene Tiso_gene_5619 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3425
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* common name:
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* transcription direction:
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** beta-glucosidase-like_chloroplastic
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** POSITIVE
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** ORF
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* left end position:
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** 29
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** beta_glucosidase
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* centisome position:
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* ec number:
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** 0.22071695   
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2PGADEHYDRAT-RXN]]
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** 1 [[Beta-D-glucosides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[Non-Glucosylated-Glucose-Acceptors]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a β-D glucoside[c] '''+''' 1 H2O[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 a non glucosylated D-glucose acceptor[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_6497]]
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* Reaction: [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_8669]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[GLYCOLYSIS]]
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***EC-NUMBER
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* [[PWY-6901]]
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** EXPERIMENTAL_ANNOTATION
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* [[P124-PWY]]
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***EC-NUMBER
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* [[PWY-6886]]
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* [[Tiso_gene_2843]]
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* [[P341-PWY]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-1622]]
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* [[Tiso_gene_6007]]
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* [[GLUCONEO-PWY]]
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** IN-SILICO_ANNOTATION
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* [[PWY66-399]]
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***EC-NUMBER
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* [[PWY-1042]]
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** EXPERIMENTAL_ANNOTATION
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* [[NPGLUCAT-PWY]]
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***EC-NUMBER
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* [[PWY-5723]]
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* [[Tiso_gene_15066]]
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* [[ANAGLYCOLYSIS-PWY]]
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** IN-SILICO_ANNOTATION
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* [[PWY-5484]]
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***EC-NUMBER
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* [[PWY-7124]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-6142]]
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***EC-NUMBER
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* [[PWY-7003]]
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* [[Tiso_gene_13305]]
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* [[PWY-2221]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6416]]
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***EC-NUMBER
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* [[PWY-6163]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-7218]]
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***EC-NUMBER
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* [[QUINATEDEG-PWY]]
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* [[Tiso_gene_15067]]
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* [[P122-PWY]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6707]]
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***EC-NUMBER
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* [[Tiso_gene_13306]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6188]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6187]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3467]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5836]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10001]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2344]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: right end position=3425}}
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** [http://www.uniprot.org/uniprot/P29091 P29091]
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{{#set: transcription direction=POSITIVE}}
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** [http://www.uniprot.org/uniprot/P29090 P29090]
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{{#set: left end position=29}}
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** [http://www.uniprot.org/uniprot/P27034 P27034]
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{{#set: centisome position=0.22071695    }}
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** [http://www.uniprot.org/uniprot/P16084 P16084]
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{{#set: reaction associated=2PGADEHYDRAT-RXN|3-DEHYDROQUINATE-DEHYDRATASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q03506 Q03506]
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{{#set: pathway associated=GLYCOLYSIS|PWY-6901|P124-PWY|PWY-6886|P341-PWY|PWY-1622|GLUCONEO-PWY|PWY66-399|PWY-1042|NPGLUCAT-PWY|PWY-5723|ANAGLYCOLYSIS-PWY|PWY-5484|PWY-7124|PWY-6142|PWY-7003|PWY-2221|PWY-6416|PWY-6163|PWY-7218|QUINATEDEG-PWY|P122-PWY|PWY-6707}}
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** [http://www.uniprot.org/uniprot/Q23892 Q23892]
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** [http://www.uniprot.org/uniprot/Q9CFI7 Q9CFI7]
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** [http://www.uniprot.org/uniprot/P22507 P22507]
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** [http://www.uniprot.org/uniprot/P33363 P33363]
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** [http://www.uniprot.org/uniprot/Q9WXN2 Q9WXN2]
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** [http://www.uniprot.org/uniprot/Q9CFL0 Q9CFL0]
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** [http://www.uniprot.org/uniprot/Q9CJ31 Q9CJ31]
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** [http://www.uniprot.org/uniprot/P12614 P12614]
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** [http://www.uniprot.org/uniprot/P06835 P06835]
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** [http://www.uniprot.org/uniprot/P26205 P26205]
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** [http://www.uniprot.org/uniprot/P26204 P26204]
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** [http://www.uniprot.org/uniprot/P07337 P07337]
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** [http://www.uniprot.org/uniprot/Q8X8G6 Q8X8G6]
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** [http://www.uniprot.org/uniprot/Q12653 Q12653]
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** [http://www.uniprot.org/uniprot/P48825 P48825]
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** [http://www.uniprot.org/uniprot/P94248 P94248]
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** [http://www.uniprot.org/uniprot/O24749 O24749]
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** [http://www.uniprot.org/uniprot/Q9SPK3 Q9SPK3]
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** [http://www.uniprot.org/uniprot/P22073 P22073]
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** [http://www.uniprot.org/uniprot/P22505 P22505]
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** [http://www.uniprot.org/uniprot/P96316 P96316]
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** [http://www.uniprot.org/uniprot/P10482 P10482]
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** [http://www.uniprot.org/uniprot/P14002 P14002]
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** [http://www.uniprot.org/uniprot/P15885 P15885]
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** [http://www.uniprot.org/uniprot/P26208 P26208]
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** [http://www.uniprot.org/uniprot/Q41172 Q41172]
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** [http://www.uniprot.org/uniprot/Q7M0Q7 Q7M0Q7]
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** [http://www.uniprot.org/uniprot/Q08638 Q08638]
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** [http://www.uniprot.org/uniprot/Q9S9H4 Q9S9H4]
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** [http://www.uniprot.org/uniprot/Q59976 Q59976]
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** [http://www.uniprot.org/uniprot/Q59437 Q59437]
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** [http://www.uniprot.org/uniprot/Q42618 Q42618]
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** [http://www.uniprot.org/uniprot/Q42975 Q42975]
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** [http://www.uniprot.org/uniprot/Q40984 Q40984]
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** [http://www.uniprot.org/uniprot/Q43073 Q43073]
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** [http://www.uniprot.org/uniprot/O82074 O82074]
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** [http://www.uniprot.org/uniprot/O24524 O24524]
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** [http://www.uniprot.org/uniprot/Q8CJM3 Q8CJM3]
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** [http://www.uniprot.org/uniprot/Q9X9R4 Q9X9R4]
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** [http://www.uniprot.org/uniprot/O68843 O68843]
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** [http://www.uniprot.org/uniprot/O82772 O82772]
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** [http://www.uniprot.org/uniprot/O49117 O49117]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: common name=ORF}}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: common name=beta_glucosidase}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: gene associated=Tiso_gene_6497|Tiso_gene_8669|Tiso_gene_2843|Tiso_gene_6007|Tiso_gene_15066|Tiso_gene_13305|Tiso_gene_15067|Tiso_gene_13306|Tiso_gene_6188|Tiso_gene_6187|Tiso_gene_3467|Tiso_gene_5836|Tiso_gene_10001|Tiso_gene_2344}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:05, 21 March 2018

Gene Tiso_gene_5619

  • right end position:
    • 3425
  • transcription direction:
    • POSITIVE
  • left end position:
    • 29
  • centisome position:
    • 0.22071695
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5619&oldid=45818"