Difference between revisions of "Tiso gene 5666"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.64-RXN 2.5.1.64-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-succinyl-5-enolpyru...")
(Created page with "Category:Gene == Gene Tiso_gene_5666 == * right end position: ** 4339 * transcription direction: ** NEGATIVE * left end position: ** 887 * centisome position: ** 6.780827...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.64-RXN 2.5.1.64-RXN] ==
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== Gene Tiso_gene_5666 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4339
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* common name:
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* transcription direction:
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** 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate_synthase
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** NEGATIVE
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** protein_chloroplastic
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* left end position:
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* ec number:
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** 887
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** [http://enzyme.expasy.org/EC/2.2.1.9 EC-2.2.1.9]
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* centisome position:
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** 6.780827   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-13185]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[ISOCHORISMATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-9924]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* With common name(s):
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** 1 2-oxoglutarate[c] '''+''' 1 isochorismate[c] '''+''' 1 H+[c] '''=>''' 1 2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate[c] '''+''' 1 CO2[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_1922]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_17551]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-7984]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* Reaction: [[RXN-7985]]
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* [[PWY-5837]], 1,4-dihydroxy-2-naphthoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5837 PWY-5837]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-5945]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4339}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25593 25593]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=887}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08165 R08165]
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{{#set: centisome position=6.780827    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-13185|RXN-7984|RXN-7985}}
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{{#set: common name=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate_synthase}}
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{{#set: pathway associated=PWY-5945}}
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{{#set: common name=protein_chloroplastic}}
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{{#set: ec number=EC-2.2.1.9}}
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{{#set: gene associated=Tiso_gene_1922|Tiso_gene_17551}}
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{{#set: in pathway=PWY-5837}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:24, 21 March 2018

Gene Tiso_gene_5666

  • right end position:
    • 4339
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 887
  • centisome position:
    • 6.780827
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5666&oldid=48548"