Difference between revisions of "Tiso gene 6815"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17472 RXN-17472] == * direction: ** LEFT-TO-RIGHT * common name: ** biotin_synthase * Synonym(s...")
(Created page with "Category:Gene == Gene Tiso_gene_6815 == * right end position: ** 4234 * transcription direction: ** POSITIVE * left end position: ** 425 * centisome position: ** 3.6004744...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17472 RXN-17472] ==
+
== Gene Tiso_gene_6815 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 4234
−
* common name:
+
* transcription direction:
−
** biotin_synthase
+
** POSITIVE
 +
* left end position:
 +
** 425
 +
* centisome position:
 +
** 3.6004744   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ASPAMINOTRANS-RXN]]
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[CPD-5662]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[CH33ADO]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 H+[c] '''+''' 1 dethiobiotin[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 1 L-methionine[c] '''+''' 1 9-mercaptodethiobiotin[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 an unsulfurated [sulfur carrier][c] '''+''' 1 5'-deoxyadenosine[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_10345]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
== Pathways  ==
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[CYSTEINE-AMINOTRANSFERASE-RXN]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: automated-name-match
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[PHEAMINOTRANS-RXN]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[PREPHENATEDEHYDRAT-RXN]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-10814]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-11737]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-13697]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[TYROSINE-AMINOTRANSFERASE-RXN]]
 +
** Source: [[orthology-synechocystis]]
 +
== Pathways associated ==
 +
* [[TYRSYN]]
 +
* [[PWY-7383]]
 +
* [[ASPARTATESYN-PWY]]
 +
* [[PWY-7117]]
 +
* [[PWY-7115]]
 +
* [[PWY-5754]]
 +
* [[PWY-5329]]
 +
* [[PWY-5048]]
 +
* [[PWY-5913]]
 +
* [[PWY-6643]]
 +
* [[PWY-6642]]
 +
* [[PWY-7432]]
 +
* [[PWY-7518]]
 +
* [[PWY-7514]]
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
 +
* [[TYRFUMCAT-PWY]]
 +
* [[PWY-3581]]
 +
* [[ASPARTATE-DEG1-PWY]]
 +
* [[PWY0-1534]]
 +
* [[PWY-5886]]
 +
* [[GLUTDEG-PWY]]
 +
* [[PWY-6318]]
 +
* [[PWY-5079]]
 +
* [[ANAPHENOXI-PWY]]
 +
* [[PWY3O-4108]]
 +
* [[PHESYN]]
 +
* [[PWY-6638]]
 +
* [[ASPARAGINE-DEG1-PWY-1]]
 +
* [[PWY-5151]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=4234}}
−
{{#set: common name=biotin_synthase}}
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: gene associated=Tiso_gene_10345}}
+
{{#set: left end position=425}}
−
{{#set: in pathway=}}
+
{{#set: centisome position=3.6004744    }}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reaction associated=ASPAMINOTRANS-RXN|CYSTEINE-AMINOTRANSFERASE-RXN|PHEAMINOTRANS-RXN|PREPHENATEDEHYDRAT-RXN|RXN-10814|RXN-11737|RXN-13697|TYROSINE-AMINOTRANSFERASE-RXN}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
{{#set: pathway associated=TYRSYN|PWY-7383|ASPARTATESYN-PWY|PWY-7117|PWY-7115|PWY-5754|PWY-5329|PWY-5048|PWY-5913|PWY-6643|PWY-6642|PWY-7432|PWY-7518|PWY-7514|MALATE-ASPARTATE-SHUTTLE-PWY|TYRFUMCAT-PWY|PWY-3581|ASPARTATE-DEG1-PWY|PWY0-1534|PWY-5886|GLUTDEG-PWY|PWY-6318|PWY-5079|ANAPHENOXI-PWY|PWY3O-4108|PHESYN|PWY-6638|ASPARAGINE-DEG1-PWY-1|PWY-5151}}
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 21:24, 21 March 2018

Gene Tiso_gene_6815

  • right end position:
    • 4234
  • transcription direction:
    • POSITIVE
  • left end position:
    • 425
  • centisome position:
    • 3.6004744
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6815&oldid=48545"