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| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] == | + | == Gene Tiso_gene_8127 == |
| − | * direction: | + | * right end position: |
| − | ** REVERSIBLE | + | ** 5931 |
| − | * common name: | + | * transcription direction: |
| − | ** branched-chain_amino_acid_aminotransferase | + | ** NEGATIVE |
| − | * ec number: | + | * left end position: |
| − | ** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42] | + | ** 4553 |
| | + | * centisome position: |
| | + | ** 43.39083 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers:
| + | * Reaction: [[DNA-DIRECTED-DNA-POLYMERASE-RXN]] |
| − | ** 1 [[ILE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[2-KETO-3-METHYL-VALERATE]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 L-isoleucine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 (S)-3-methyl-2-oxopentanoate[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * Gene: [[Tiso_gene_14984]] | + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | ** Source: [[orthology-creinhardtii]]
| + | |
| − | * Gene: [[Tiso_gene_18403]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | * Gene: [[Tiso_gene_17748]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | == Pathways ==
| + | |
| − | * [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
| + | |
| − | ** '''7''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
| + | |
| − | ** '''4''' reactions found over '''6''' reactions in the full pathway
| + | |
| − | * [[PWY-5108]], L-isoleucine biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5108 PWY-5108]
| + | |
| − | ** '''2''' reactions found over '''3''' reactions in the full pathway
| + | |
| − | * [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
| + | |
| − | ** '''4''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
| + | |
| − | ** '''5''' reactions found over '''8''' reactions in the full pathway
| + | |
| − | * [[PWY-5078]], L-isoleucine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5078 PWY-5078]
| + | |
| − | ** '''2''' reactions found over '''3''' reactions in the full pathway
| + | |
| − | * [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
| + | |
| − | ** '''3''' reactions found over '''6''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-creinhardtii]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Tool: [[pathwaytools]] | + | *** Assignment: ec-number |
| | + | == Pathways associated == |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=5931}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24801 24801]
| + | {{#set: transcription direction=NEGATIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=4553}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02199 R02199]
| + | {{#set: centisome position=43.39083 }} |
| − | * UNIPROT:
| + | {{#set: reaction associated=DNA-DIRECTED-DNA-POLYMERASE-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P38891 P38891]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P47176 P47176]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O86505 O86505]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O14370 O14370]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O32954 O32954]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
| + | |
| − | {{#set: direction=REVERSIBLE}} | + | |
| − | {{#set: common name=branched-chain_amino_acid_aminotransferase}} | + | |
| − | {{#set: ec number=EC-2.6.1.42}} | + | |
| − | {{#set: gene associated=Tiso_gene_14984|Tiso_gene_18403|Tiso_gene_17748}} | + | |
| − | {{#set: in pathway=ILEUSYN-PWY|ILEUDEG-PWY|PWY-5108|PWY-5103|PWY-5101|PWY-5078|PWY-5104}} | + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
