Difference between revisions of "Tiso gene 9139"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5-METHYLCYTOSINE-34-TRNA-PRECURSORS 5-METHYLCYTOSINE-34-TRNA-PRECURSORS] == * common name: ** a...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUC1PURIDYLTRANS-RXN GLUC1PURIDYLTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** utp--g...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5-METHYLCYTOSINE-34-TRNA-PRECURSORS 5-METHYLCYTOSINE-34-TRNA-PRECURSORS] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUC1PURIDYLTRANS-RXN GLUC1PURIDYLTRANS-RXN] ==
 +
* direction:
 +
** REVERSIBLE
 
* common name:
 
* common name:
−
** a 5 methylcytosine34 in tRNA precursor
+
** utp--glucose-1-phosphate_uridylyltransferase
 +
** dp-n-acetylglucosamine_pyrophosphorylase
 +
** f-box_lrr-repeat_protein_13-like
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.7.64 EC-2.7.7.64]
 +
** [http://enzyme.expasy.org/EC/2.7.7.9 EC-2.7.7.9]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
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* With identifiers:
−
* [[RXN-11856]]
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** 1 [[UTP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLC-1-P]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-12575]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 UTP[c] '''+''' 1 H+[c] '''+''' 1 &alpha;-D-glucopyranose 1-phosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 UDP-&alpha;-D-glucose[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_6459]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4816]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17531]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5879]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17566]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16930]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14796]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_9110]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13477]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_7440]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_11401]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6457]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6458]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7102]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-7343]], UDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7343 PWY-7343]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
 +
** '''7''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=a 5 methylcytosine34 in tRNA precursor}}
+
* RHEA:
−
{{#set: produced by=RXN-11856}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19889 19889]
 +
* PIR:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40650 A40650]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41382 A41382]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56146 A56146]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64250 A64250]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64970 A64970]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A75096 A75096]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D49349 D49349]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69184 D69184]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70601 D70601]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64466 E64466]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E71913 E71913]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F59102 F59102]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64600 F64600]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F81300 F81300]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64095 G64095]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G70125 G70125]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70446 H70446]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC2265 JC2265]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4785 JC4785]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4985 JC4985]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0277 JX0277]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15298 S15298]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S30007 S30007]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S31431 S31431]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S35692 S35692]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41533 S41533]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62599 S62599]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S73501 S73501]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78541 S78541]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T42521 T42521]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44841 T44841]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45453 T45453]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNDOU XNDOU]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNPOU XNPOU]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00289 R00289]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q05852 Q05852]
 +
** [http://www.uniprot.org/uniprot/P27897 P27897]
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** [http://www.uniprot.org/uniprot/Q48447 Q48447]
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** [http://www.uniprot.org/uniprot/P47691 P47691]
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** [http://www.uniprot.org/uniprot/P0AAB6 P0AAB6]
 +
** [http://www.uniprot.org/uniprot/Q9UZI7 Q9UZI7]
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** [http://www.uniprot.org/uniprot/P33696 P33696]
 +
** [http://www.uniprot.org/uniprot/O26731 O26731]
 +
** [http://www.uniprot.org/uniprot/O05576 O05576]
 +
** [http://www.uniprot.org/uniprot/Q58730 Q58730]
 +
** [http://www.uniprot.org/uniprot/Q9ZLI8 Q9ZLI8]
 +
** [http://www.uniprot.org/uniprot/Q9X364 Q9X364]
 +
** [http://www.uniprot.org/uniprot/O25363 O25363]
 +
** [http://www.uniprot.org/uniprot/Q9PMD3 Q9PMD3]
 +
** [http://www.uniprot.org/uniprot/P44878 P44878]
 +
** [http://www.uniprot.org/uniprot/O51225 O51225]
 +
** [http://www.uniprot.org/uniprot/O67602 O67602]
 +
** [http://www.uniprot.org/uniprot/P0AEP3 P0AEP3]
 +
** [http://www.uniprot.org/uniprot/Q43772 Q43772]
 +
** [http://www.uniprot.org/uniprot/P74969 P74969]
 +
** [http://www.uniprot.org/uniprot/Q07130 Q07130]
 +
** [http://www.uniprot.org/uniprot/P32861 P32861]
 +
** [http://www.uniprot.org/uniprot/P19595 P19595]
 +
** [http://www.uniprot.org/uniprot/Q07131 Q07131]
 +
** [http://www.uniprot.org/uniprot/P37776 P37776]
 +
** [http://www.uniprot.org/uniprot/P75124 P75124]
 +
** [http://www.uniprot.org/uniprot/Q46768 Q46768]
 +
** [http://www.uniprot.org/uniprot/P78811 P78811]
 +
** [http://www.uniprot.org/uniprot/Q9RMC3 Q9RMC3]
 +
** [http://www.uniprot.org/uniprot/Q9Z5G1 Q9Z5G1]
 +
** [http://www.uniprot.org/uniprot/P08800 P08800]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=utp--glucose-1-phosphate_uridylyltransferase}}
 +
{{#set: common name=dp-n-acetylglucosamine_pyrophosphorylase}}
 +
{{#set: common name=f-box_lrr-repeat_protein_13-like}}
 +
{{#set: ec number=EC-2.7.7.64}}
 +
{{#set: ec number=EC-2.7.7.9}}
 +
{{#set: gene associated=Tiso_gene_6459|Tiso_gene_4816|Tiso_gene_17531|Tiso_gene_5879|Tiso_gene_17566|Tiso_gene_16930|Tiso_gene_14796|Tiso_gene_9110|Tiso_gene_13477|Tiso_gene_7440|Tiso_gene_11401|Tiso_gene_6457|Tiso_gene_6458|Tiso_gene_7102}}
 +
{{#set: in pathway=PWY-7343|PWY-3801|PWY-7817|PWY-6527|PWY-7238}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:54, 21 March 2018

Reaction GLUC1PURIDYLTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • utp--glucose-1-phosphate_uridylyltransferase
    • dp-n-acetylglucosamine_pyrophosphorylase
    • f-box_lrr-repeat_protein_13-like
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UTP[c] + 1 H+[c] + 1 α-D-glucopyranose 1-phosphate[c] <=> 1 diphosphate[c] + 1 UDP-α-D-glucose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7343, UDP-glucose biosynthesis: PWY-7343
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3801, sucrose degradation II (sucrose synthase): PWY-3801
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus): PWY-7817
    • 7 reactions found over 16 reactions in the full pathway
  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7238, sucrose biosynthesis II: PWY-7238
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9139&oldid=31126"