Difference between revisions of "Tiso gene 9179"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Gene == Gene Tiso_gene_9179 == * right end position: ** 3240 * transcription direction: ** POSITIVE * left end position: ** 631 * centisome position: ** 6.621891...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] ==
+
== Gene Tiso_gene_9179 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 3240
−
* common name:
+
* transcription direction:
−
** arginyl-trna_synthetase
+
** POSITIVE
−
** arginine-trna_ligase
+
* left end position:
−
* ec number:
+
** 631
−
** [http://enzyme.expasy.org/EC/6.1.1.19 EC-6.1.1.19]
+
* centisome position:
 +
** 6.621891   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[F16ALDOLASE-RXN]]
−
** 1 [[ARG-tRNAs]][c] '''+''' 1 [[ARG]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[AMP]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 a tRNAarg[c] '''+''' 1 L-arginine[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-arginyl-[tRNAarg][c] '''+''' 1 AMP[c]
+
** Source: [[annotation-experimental_annotation]]
−
 
+
*** Assignment: ec-number
−
== Genes associated with this reaction  ==
+
** Source: [[orthology-esiliculosus]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN-8631]]
−
* [[Tiso_gene_16360]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Reaction: [[SEDOBISALDOL-RXN]]
−
* [[Tiso_gene_12997]]
+
** Source: [[orthology-synechocystis]]
−
** IN-SILICO_ANNOTATION
+
== Pathways associated ==
−
***EC-NUMBER
+
* [[PWY-1042]]
−
** EXPERIMENTAL_ANNOTATION
+
* [[P341-PWY]]
−
***EC-NUMBER
+
* [[PWY66-399]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[PWY66-373]]
−
== Pathways  ==
+
* [[SUCSYN-PWY]]
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[GLYCOLYSIS]]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
* [[PWY-7385]]
−
== Reconstruction information  ==
+
* [[ANAGLYCOLYSIS-PWY]]
−
* [[orthology]]:
+
* [[CALVIN-PWY]]
−
** [[pantograph]]:
+
* [[PWY0-1517]]
−
*** [[esiliculosus]]
+
* [[PWY-1861]]
−
* [[annotation]]:
+
* [[PWY-6142]]
−
** [[pathwaytools]]:
+
* [[PWY-5484]]
−
*** [[experimental_annotation]]
+
* [[P185-PWY]]
−
*** [[in-silico_annotation]]
+
* [[GLUCONEO-PWY]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=3240}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20301 20301]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=631}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03646 R03646]
+
{{#set: centisome position=6.621891    }}
−
* UNIPROT:
+
{{#set: reaction associated=F16ALDOLASE-RXN|RXN-8631|SEDOBISALDOL-RXN}}
−
** [http://www.uniprot.org/uniprot/P40329 P40329]
+
{{#set: pathway associated=PWY-1042|P341-PWY|PWY66-399|PWY66-373|SUCSYN-PWY|GLYCOLYSIS|PWY-7385|ANAGLYCOLYSIS-PWY|CALVIN-PWY|PWY0-1517|PWY-1861|PWY-6142|PWY-5484|P185-PWY|GLUCONEO-PWY}}
−
** [http://www.uniprot.org/uniprot/P35868 P35868]
+
−
** [http://www.uniprot.org/uniprot/P43832 P43832]
+
−
** [http://www.uniprot.org/uniprot/O51540 O51540]
+
−
** [http://www.uniprot.org/uniprot/O67068 O67068]
+
−
** [http://www.uniprot.org/uniprot/O59147 O59147]
+
−
** [http://www.uniprot.org/uniprot/O83803 O83803]
+
−
** [http://www.uniprot.org/uniprot/Q9ZE81 Q9ZE81]
+
−
** [http://www.uniprot.org/uniprot/Q9PNC0 Q9PNC0]
+
−
** [http://www.uniprot.org/uniprot/Q9X0H8 Q9X0H8]
+
−
** [http://www.uniprot.org/uniprot/P46906 P46906]
+
−
** [http://www.uniprot.org/uniprot/Q57689 Q57689]
+
−
** [http://www.uniprot.org/uniprot/O27496 O27496]
+
−
** [http://www.uniprot.org/uniprot/Q9JTM7 Q9JTM7]
+
−
** [http://www.uniprot.org/uniprot/Q9CE12 Q9CE12]
+
−
** [http://www.uniprot.org/uniprot/P56128 P56128]
+
−
** [http://www.uniprot.org/uniprot/P47618 P47618]
+
−
** [http://www.uniprot.org/uniprot/Q9ZMB9 Q9ZMB9]
+
−
** [http://www.uniprot.org/uniprot/Q08888 Q08888]
+
−
** [http://www.uniprot.org/uniprot/P54136 P54136]
+
−
** [http://www.uniprot.org/uniprot/P38714 P38714]
+
−
** [http://www.uniprot.org/uniprot/Q05506 Q05506]
+
−
** [http://www.uniprot.org/uniprot/P75222 P75222]
+
−
** [http://www.uniprot.org/uniprot/P11875 P11875]
+
−
** [http://www.uniprot.org/uniprot/O23247 O23247]
+
−
** [http://www.uniprot.org/uniprot/O74781 O74781]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=arginyl-trna_synthetase}}
+
−
{{#set: common name=arginine-trna_ligase}}
+
−
{{#set: ec number=EC-6.1.1.19}}
+
−
{{#set: gene associated=Tiso_gene_16360|Tiso_gene_12997}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:58, 21 March 2018

Gene Tiso_gene_9179

  • right end position:
    • 3240
  • transcription direction:
    • POSITIVE
  • left end position:
    • 631
  • centisome position:
    • 6.621891
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9179&oldid=45024"