Difference between revisions of "Tiso gene 9290"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] == * direction: ** LEFT-TO-RIGHT * common name: ** peptidoglycan transpeptidas...")
 
(Created page with "Category:Gene == Gene Tiso_gene_9290 == * right end position: ** 6446 * transcription direction: ** NEGATIVE * left end position: ** 2856 * centisome position: ** 30.18389...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] ==
+
== Gene Tiso_gene_9290 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 6446
−
* common name:
+
* transcription direction:
−
** peptidoglycan transpeptidase (Gram-negative bacteria)
+
** NEGATIVE
−
** beta-lactamase
+
* left end position:
−
* ec number:
+
** 2856
−
** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
+
* centisome position:
 +
** 30.183893   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[CDPKIN-RXN]]
−
** 1 [[CPD-17927]][c] '''+''' 1 [[CPD-17931]][c] '''=>''' 1 [[CPD-17932]][c] '''+''' 1 [[D-ALANINE]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] '''+''' 1 a peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] '''=>''' 1 a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c] '''+''' 1 D-alanine[c]
+
* Reaction: [[DADPKIN-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[DCDPKIN-RXN]]
−
* [[Tiso_gene_18870]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
* Reaction: [[DGDPKIN-RXN]]
−
== Pathways ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1586 PWY0-1586]
+
*** Assignment: ec-number
−
** '''2''' reactions found over '''12''' reactions in the full pathway
+
* Reaction: [[DTDPKIN-RXN]]
−
== Reconstruction information  ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [[annotation]]:
+
*** Assignment: ec-number
−
** [[pathwaytools]]:
+
* Reaction: [[DUDPKIN-RXN]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[GDPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[NUCLEOSIDE-DIP-KIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14120]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14228]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[UDPKIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-7210]]
 +
* [[PWY-7198]]
 +
* [[PWY-7176]]
 +
* [[PWY-7220]]
 +
* [[PWY-7184]]
 +
* [[PWY-7222]]
 +
* [[PWY-7205]]
 +
* [[PWY-7224]]
 +
* [[PWY-7197]]
 +
* [[PWY0-166]]
 +
* [[PWY-7227]]
 +
* [[PPGPPMET-PWY]]
 +
* [[PWY-7226]]
 +
* [[PWY-7221]]
 +
* [[PWY-6545]]
 +
* [[PWY-7187]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=6446}}
−
{{#set: common name=peptidoglycan transpeptidase (Gram-negative bacteria)}}
+
{{#set: transcription direction=NEGATIVE}}
−
{{#set: common name=beta-lactamase}}
+
{{#set: left end position=2856}}
−
{{#set: ec number=EC-3.4.16.4}}
+
{{#set: centisome position=30.183893    }}
−
{{#set: gene associated=Tiso_gene_18870}}
+
{{#set: reaction associated=CDPKIN-RXN|DADPKIN-RXN|DCDPKIN-RXN|DGDPKIN-RXN|DTDPKIN-RXN|DUDPKIN-RXN|GDPKIN-RXN|NUCLEOSIDE-DIP-KIN-RXN|RXN-14120|RXN-14228|UDPKIN-RXN}}
−
{{#set: in pathway=PWY0-1586}}
+
{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7176|PWY-7220|PWY-7184|PWY-7222|PWY-7205|PWY-7224|PWY-7197|PWY0-166|PWY-7227|PPGPPMET-PWY|PWY-7226|PWY-7221|PWY-6545|PWY-7187}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:28, 21 March 2018

Gene Tiso_gene_9290

  • right end position:
    • 6446
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2856
  • centisome position:
    • 30.183893
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9290&oldid=41862"