Difference between revisions of "TransportSeed CL-"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-c-methyl-d-erythritol_-cycl...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_CL- TransportSeed_CL-] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Fo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_CL- TransportSeed_CL-] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
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** 2-c-methyl-d-erythritol_-cyclodiphosphate_synthase
 
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* ec number:
 
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** [http://enzyme.expasy.org/EC/4.6.1.12 EC-4.6.1.12]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c]
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** 1.0 [[CL-]][e] '''=>''' 1.0 [[CL-]][c]
 
* With common name(s):
 
* With common name(s):
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** 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1 CMP[c] '''+''' 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c]
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** 1.0 chloride[e] '''=>''' 1.0 chloride[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
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* Gene: [[Tiso_gene_9642]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
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*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
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*** Assignment: EC-NUMBER
 
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** Source: [[orthology-synechocystis]]
 
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** Source: [[orthology-esiliculosus]]
 
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** Source: [[orthology-creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[manual]]
 
* Category: [[manual]]
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** Source: [[manual-primary_network]]
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** Source: [[manual-import_from_medium]]
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* Category: [[annotation]]
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*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-experimental_annotation]]
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−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=2-c-methyl-d-erythritol_-cyclodiphosphate_synthase}}
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{{#set: in pathway=}}
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{{#set: ec number=EC-4.6.1.12}}
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{{#set: reconstruction category=manual}}
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{{#set: gene associated=Tiso_gene_9642}}
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{{#set: reconstruction source=manual-import_from_medium}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
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{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:36, 21 March 2018

Reaction TransportSeed_CL-

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 chloride[e] => 1.0 chloride[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TransportSeed_CL-&oldid=42676"