Difference between revisions of "Workflow"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosp...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5462 RXN0-5462] == * direction: ** LEFT-TO-RIGHT * common name: ** at1g33290 ** uridine_kinase...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONDEHYDROG-RXN 6PGLUCONDEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5462 RXN0-5462] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating]
+
** at1g33290
 +
** uridine_kinase
 +
** ORF
 +
** atp-dependent_metalloprotease
 +
** member_of_the_hsp104_clp_superfamily
 +
** katanin_p60_atpase-containing_subunit_a-like_2
 +
** helicase_mov-10-_-like
 +
** replication_factor_c_subunit_5
 +
** e3_ubiquitin-protein_ligase_rnf213-like
 +
** replication_factor_c_subunit_2
 +
** atpase_family_aaa_domain-containing_protein_2b-_partial
 +
** adenylate_guanylate
 +
** replication_factor_c_subunit_3
 +
** adenylate_kinase_domain-containing_protein_1
 +
** replication_control_protein_1_like
 +
** aaa_family_cdc48_subfamily
 +
** fidgetin-like_protein1
 +
** dna-binding_protein_smubp-2
 +
** atp-dependent_zinc_metalloprotease
 +
** gtpase
 +
** cytosolic_fe-s_cluster_assembly_factor_nubp1_homolog
 +
** uncharacterized_transmembrane_protein_ddb_g0290641
 +
** isoform_m_of_dna_helicase_mcm9
 +
** replication_factor_c_subunit_1
 +
** 26s_proteaseregulatorysubunit6bhomolog
 +
** atpase_family_associated_with_various_cellular_activities
 +
** nfx1-type_zinc_finger-containing_protein_1
 +
** gtpase_der
 +
** origin_recognition_complex_subunit_4
 +
** hsp104
 +
** atpase_afg2_protein
 +
** trna-splicing_endonuclease_positive_effector
 +
** sh2_domain_containing_protein
 +
** atp-dependent_proteaseatpasesubunit
 +
** atpase_aaa
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.351 EC-1.1.1.351]
+
** [http://enzyme.expasy.org/EC/3.6.5.1 EC-3.6.5.1]
 +
** [http://enzyme.expasy.org/EC/3.6.5.2 EC-3.6.5.2]
 +
** [http://enzyme.expasy.org/EC/3.6.5.3 EC-3.6.5.3]
 +
** [http://enzyme.expasy.org/EC/3.6.5.4 EC-3.6.5.4]
 +
** [http://enzyme.expasy.org/EC/3.6.5.5 EC-3.6.5.5]
 +
** [http://enzyme.expasy.org/EC/3.6.5.6 EC-3.6.5.6]
 +
** [http://enzyme.expasy.org/EC/3.6.1.15 EC-3.6.1.15]
 
* Synonym(s):
 
* Synonym(s):
−
** 6PGD
 
−
** 6-phosphogluconic carboxylase
 
−
** 6-phosphogluconic dehydrogenase
 
−
** Phosphogluconic acid dehydrogenase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[CPD-2961]][c] '''=>''' 1 [[RIBULOSE-5P]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[GDP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD(P)+[c] '''+''' 1 D-gluconate 6-phosphate[c] '''=>''' 1 D-ribulose 5-phosphate[c] '''+''' 1 NAD(P)H[c] '''+''' 1 CO2[c]
+
** 1 H2O[c] '''+''' 1 GTP[c] '''=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 GDP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_91]]
+
* Gene: [[Tiso_gene_19350]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_20238]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_826]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_13653]]
−
* [[Tiso_gene_7157]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_1984]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1959]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8859]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15500]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9423]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4155]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_20327]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_546]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8950]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12149]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4596]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4092]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_195]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2452]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20353]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_250]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_873]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16252]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_12148]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_674]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10221]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2449]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4726]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5166]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2068]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_199]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8949]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1611]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1541]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2447]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14239]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11098]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14474]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6614]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5525]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14227]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14646]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17449]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9659]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1610]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8860]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_38]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13738]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13264]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1291]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2889]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_623]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_829]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7387]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4192]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2631]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2924]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17616]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5529]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9926]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7734]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14586]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11012]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13325]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2448]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8461]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8601]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17751]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3287]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1960]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_538]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_537]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3653]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9243]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2929]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8584]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15320]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6180]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2451]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2604]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4194]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10282]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9234]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7745]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12899]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16478]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4437]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4436]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2897]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1444]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15465]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8164]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2450]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4026]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19098]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14816]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_572]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14226]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7123]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8763]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20236]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6181]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2176]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15043]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9004]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4330]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9114]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13268]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9959]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13681]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10116 10116]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19669 19669]
−
* UNIPROT:
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P14332 P14332]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00335 R00335]
−
** [http://www.uniprot.org/uniprot/P31072 P31072]
+
−
** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
+
−
** [http://www.uniprot.org/uniprot/P47506 P47506]
+
−
** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
+
−
** [http://www.uniprot.org/uniprot/P43774 P43774]
+
−
** [http://www.uniprot.org/uniprot/P12013 P12013]
+
−
** [http://www.uniprot.org/uniprot/P41576 P41576]
+
−
** [http://www.uniprot.org/uniprot/P00350 P00350]
+
−
** [http://www.uniprot.org/uniprot/P00349 P00349]
+
−
** [http://www.uniprot.org/uniprot/P52209 P52209]
+
−
** [http://www.uniprot.org/uniprot/P41581 P41581]
+
−
** [http://www.uniprot.org/uniprot/P41582 P41582]
+
−
** [http://www.uniprot.org/uniprot/Q59275 Q59275]
+
−
** [http://www.uniprot.org/uniprot/P41583 P41583]
+
−
** [http://www.uniprot.org/uniprot/Q60254 Q60254]
+
−
** [http://www.uniprot.org/uniprot/P37754 P37754]
+
−
** [http://www.uniprot.org/uniprot/Q59410 Q59410]
+
−
** [http://www.uniprot.org/uniprot/P52207 P52207]
+
−
** [http://www.uniprot.org/uniprot/P70718 P70718]
+
−
** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
+
−
** [http://www.uniprot.org/uniprot/P41572 P41572]
+
−
** [http://www.uniprot.org/uniprot/P14062 P14062]
+
−
** [http://www.uniprot.org/uniprot/P21577 P21577]
+
−
** [http://www.uniprot.org/uniprot/P38720 P38720]
+
−
** [http://www.uniprot.org/uniprot/Q40311 Q40311]
+
−
** [http://www.uniprot.org/uniprot/P53319 P53319]
+
−
** [http://www.uniprot.org/uniprot/O81237 O81237]
+
−
** [http://www.uniprot.org/uniprot/O81238 O81238]
+
−
** [http://www.uniprot.org/uniprot/O81239 O81239]
+
−
** [http://www.uniprot.org/uniprot/O22111 O22111]
+
−
** [http://www.uniprot.org/uniprot/Q17761 Q17761]
+
−
** [http://www.uniprot.org/uniprot/O32911 O32911]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating]}}
+
{{#set: common name=at1g33290}}
−
{{#set: ec number=EC-1.1.1.351}}
+
{{#set: common name=uridine_kinase}}
−
{{#set: common name=6PGD|6-phosphogluconic carboxylase|6-phosphogluconic dehydrogenase|Phosphogluconic acid dehydrogenase}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_91|Tiso_gene_20238|Tiso_gene_7157}}
+
{{#set: common name=atp-dependent_metalloprotease}}
−
{{#set: in pathway=P122-PWY}}
+
{{#set: common name=member_of_the_hsp104_clp_superfamily}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=katanin_p60_atpase-containing_subunit_a-like_2}}
−
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: common name=helicase_mov-10-_-like}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=replication_factor_c_subunit_5}}
 +
{{#set: common name=e3_ubiquitin-protein_ligase_rnf213-like}}
 +
{{#set: common name=replication_factor_c_subunit_2}}
 +
{{#set: common name=atpase_family_aaa_domain-containing_protein_2b-_partial}}
 +
{{#set: common name=adenylate_guanylate}}
 +
{{#set: common name=replication_factor_c_subunit_3}}
 +
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
 +
{{#set: common name=replication_control_protein_1_like}}
 +
{{#set: common name=aaa_family_cdc48_subfamily}}
 +
{{#set: common name=fidgetin-like_protein1}}
 +
{{#set: common name=dna-binding_protein_smubp-2}}
 +
{{#set: common name=atp-dependent_zinc_metalloprotease}}
 +
{{#set: common name=gtpase}}
 +
{{#set: common name=cytosolic_fe-s_cluster_assembly_factor_nubp1_homolog}}
 +
{{#set: common name=uncharacterized_transmembrane_protein_ddb_g0290641}}
 +
{{#set: common name=isoform_m_of_dna_helicase_mcm9}}
 +
{{#set: common name=replication_factor_c_subunit_1}}
 +
{{#set: common name=26s_proteaseregulatorysubunit6bhomolog}}
 +
{{#set: common name=atpase_family_associated_with_various_cellular_activities}}
 +
{{#set: common name=nfx1-type_zinc_finger-containing_protein_1}}
 +
{{#set: common name=gtpase_der}}
 +
{{#set: common name=origin_recognition_complex_subunit_4}}
 +
{{#set: common name=hsp104}}
 +
{{#set: common name=atpase_afg2_protein}}
 +
{{#set: common name=trna-splicing_endonuclease_positive_effector}}
 +
{{#set: common name=sh2_domain_containing_protein}}
 +
{{#set: common name=atp-dependent_proteaseatpasesubunit}}
 +
{{#set: common name=atpase_aaa}}
 +
{{#set: ec number=EC-3.6.5.1}}
 +
{{#set: ec number=EC-3.6.5.2}}
 +
{{#set: ec number=EC-3.6.5.3}}
 +
{{#set: ec number=EC-3.6.5.4}}
 +
{{#set: ec number=EC-3.6.5.5}}
 +
{{#set: ec number=EC-3.6.5.6}}
 +
{{#set: ec number=EC-3.6.1.15}}
 +
{{#set: gene associated=Tiso_gene_19350|Tiso_gene_826|Tiso_gene_13653|Tiso_gene_1984|Tiso_gene_1959|Tiso_gene_8859|Tiso_gene_15500|Tiso_gene_9423|Tiso_gene_4155|Tiso_gene_20327|Tiso_gene_546|Tiso_gene_8950|Tiso_gene_12149|Tiso_gene_4596|Tiso_gene_4092|Tiso_gene_195|Tiso_gene_2452|Tiso_gene_20353|Tiso_gene_250|Tiso_gene_873|Tiso_gene_16252|Tiso_gene_12148|Tiso_gene_674|Tiso_gene_10221|Tiso_gene_2449|Tiso_gene_4726|Tiso_gene_5166|Tiso_gene_2068|Tiso_gene_199|Tiso_gene_8949|Tiso_gene_1611|Tiso_gene_1541|Tiso_gene_2447|Tiso_gene_14239|Tiso_gene_11098|Tiso_gene_14474|Tiso_gene_6614|Tiso_gene_5525|Tiso_gene_14227|Tiso_gene_14646|Tiso_gene_17449|Tiso_gene_9659|Tiso_gene_1610|Tiso_gene_8860|Tiso_gene_38|Tiso_gene_13738|Tiso_gene_13264|Tiso_gene_1291|Tiso_gene_2889|Tiso_gene_623|Tiso_gene_829|Tiso_gene_7387|Tiso_gene_4192|Tiso_gene_2631|Tiso_gene_2924|Tiso_gene_17616|Tiso_gene_5529|Tiso_gene_9926|Tiso_gene_7734|Tiso_gene_14586|Tiso_gene_11012|Tiso_gene_13325|Tiso_gene_2448|Tiso_gene_8461|Tiso_gene_8601|Tiso_gene_17751|Tiso_gene_3287|Tiso_gene_1960|Tiso_gene_538|Tiso_gene_537|Tiso_gene_3653|Tiso_gene_9243|Tiso_gene_2929|Tiso_gene_8584|Tiso_gene_15320|Tiso_gene_6180|Tiso_gene_2451|Tiso_gene_2604|Tiso_gene_4194|Tiso_gene_10282|Tiso_gene_9234|Tiso_gene_7745|Tiso_gene_12899|Tiso_gene_16478|Tiso_gene_4437|Tiso_gene_4436|Tiso_gene_2897|Tiso_gene_1444|Tiso_gene_15465|Tiso_gene_8164|Tiso_gene_2450|Tiso_gene_4026|Tiso_gene_19098|Tiso_gene_14816|Tiso_gene_572|Tiso_gene_14226|Tiso_gene_7123|Tiso_gene_8763|Tiso_gene_20236|Tiso_gene_6181|Tiso_gene_2176|Tiso_gene_15043|Tiso_gene_9004|Tiso_gene_4330|Tiso_gene_9114|Tiso_gene_13268|Tiso_gene_9959|Tiso_gene_13681}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:09, 21 March 2018

Reaction RXN0-5462

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • at1g33290
    • uridine_kinase
    • ORF
    • atp-dependent_metalloprotease
    • member_of_the_hsp104_clp_superfamily
    • katanin_p60_atpase-containing_subunit_a-like_2
    • helicase_mov-10-_-like
    • replication_factor_c_subunit_5
    • e3_ubiquitin-protein_ligase_rnf213-like
    • replication_factor_c_subunit_2
    • atpase_family_aaa_domain-containing_protein_2b-_partial
    • adenylate_guanylate
    • replication_factor_c_subunit_3
    • adenylate_kinase_domain-containing_protein_1
    • replication_control_protein_1_like
    • aaa_family_cdc48_subfamily
    • fidgetin-like_protein1
    • dna-binding_protein_smubp-2
    • atp-dependent_zinc_metalloprotease
    • gtpase
    • cytosolic_fe-s_cluster_assembly_factor_nubp1_homolog
    • uncharacterized_transmembrane_protein_ddb_g0290641
    • isoform_m_of_dna_helicase_mcm9
    • replication_factor_c_subunit_1
    • 26s_proteaseregulatorysubunit6bhomolog
    • atpase_family_associated_with_various_cellular_activities
    • nfx1-type_zinc_finger-containing_protein_1
    • gtpase_der
    • origin_recognition_complex_subunit_4
    • hsp104
    • atpase_afg2_protein
    • trna-splicing_endonuclease_positive_effector
    • sh2_domain_containing_protein
    • atp-dependent_proteaseatpasesubunit
    • atpase_aaa
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 GTP[c] => 1 H+[c] + 1 phosphate[c] + 1 GDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

























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