Difference between revisions of "RNASE-R-DEGRADATION-SUBSTRATE-RNA"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5468 RXN-5468] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=RNASE-R-DEGRADATION-SUBSTRATE-RNA RNASE-R-DEGRADATION-SUBSTRATE-RNA] == * common name: ** RNase...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5468 RXN-5468] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=RNASE-R-DEGRADATION-SUBSTRATE-RNA RNASE-R-DEGRADATION-SUBSTRATE-RNA] ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** RNase R degradation substrate RNA
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* ec number:
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** [http://enzyme.expasy.org/EC/2.4.1.260 EC-2.4.1.260]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN0-7023]]
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** 1 [[CPD-171]][c] '''+''' 1 [[CPD-5166]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DOLICHOLP]][c] '''+''' 1 [[CPD-5167]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 a dolichyl β-D-mannosyl phosphate[c] '''+''' 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''=>''' 1 H+[c] '''+''' 1 a dolichyl phosphate[c] '''+''' 1 α-D-Man-a-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[CHC_T00009193001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways  ==
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** '''12''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=RNase R degradation substrate RNA}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29538 29538]
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{{#set: consumed by=RXN0-7023}}
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R06260 R06260]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.4.1.260}}
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{{#set: gene associated=CHC_T00009193001_1}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Latest revision as of 14:55, 23 May 2018

Metabolite RNASE-R-DEGRADATION-SUBSTRATE-RNA

  • common name:
    • RNase R degradation substrate RNA
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RNASE-R-DEGRADATION-SUBSTRATE-RNA&oldid=12605"