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GEM description

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of ' results to a Genome scale Model containing 2024 reactions, 2196 metabolites, 2006 genes and 1108 pathways. This GeM was obtained based on the following sources:

  • Based on annotation data:
    • Tool: Pathway tools
      • Creation of a metabolic network containing 595 reactions
  • Based on orthology data:
    • Tool: Pantograph
      • From template GALDIERIA.SULPHURARIA creation of a metabolic network containing: 1361 reactions
      • From template ARABIDOPSIS_THALIANA creation of a metabolic network containing: 383 reactions
      • From template ECTOCARPUS_SILICULOSUS creation of a metabolic network containing: 1161 reactions
  • Based on expertise:
      • 76 reaction(s) added
  • Based on gap-filling:
    • Tool: meneco
      • 146 reaction(s) added


Collaborative curation

  • Suggest reactions to add or remove:
  • Suggest new reactions to create and add:
  • Follow the examples given in the form(s) to correctly share your suggestions
  • Send the filled form(s) to: