Difference between revisions of "PEPTIDYLPROLYL-ISOMERASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14959 RXN-14959] == * direction: ** LEFT-TO-RIGHT * common name: ** Lipoate synthase * ec numbe...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDYLPROLYL-ISOMERASE-RXN PEPTIDYLPROLYL-ISOMERASE-RXN] == * direction: ** REVERSIBLE * common n...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14959 RXN-14959] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDYLPROLYL-ISOMERASE-RXN PEPTIDYLPROLYL-ISOMERASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Lipoate synthase
+
** Peptidyl-prolyl cis-trans isomerase
 +
** peptidyl-prolyl cis-trans isomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.8.1.8 EC-2.8.1.8]
+
** [http://enzyme.expasy.org/EC/5.2.1.8 EC-5.2.1.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[a-2-oxoglutarate-dehydrogenase-E2-protei]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[CH33ADO]][c] '''+''' 2 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[MET]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c]
+
** 1 [[CPD-8624]][c] '''<=>''' 1 [[CPD-8625]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 a sulfurated [sulfur carrier][c] '''+''' 1 a [2-oxoglutarate-dehydrogenase E2 protein] N6-octanoyl-L-lysine[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 2 5'-deoxyadenosine[c] '''+''' 2 an unsulfurated [sulfur carrier][c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 2 L-methionine[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine[c]
+
** 1 a [protein]-L-proline (&omega; = 180)[c] '''<=>''' 1 a [protein]-L-proline (&omega; = 0)[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008509001_1]]
+
* Gene: [[CHC_T00007958001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00008509001]]
+
* Gene: [[CHC_T00007696001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[CHC_T00010100001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00009539001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00006888001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00000384001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00006996001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00003429001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00002787001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008963001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008726001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008963001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00001971001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00010100001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00003821001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00007913001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00005215001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00006404001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00006301001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00006154001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009552001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00001335001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008599001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008420001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008322001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00007310001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009539001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00009116001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00004338001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009552001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009116001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7382]], lipoate biosynthesis and incorporation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7382 PWY-7382]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* LIGAND-RXN:
−
{{#set: common name=Lipoate synthase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04273 R04273]
−
{{#set: ec number=EC-2.8.1.8}}
+
* UNIPROT:
−
{{#set: gene associated=CHC_T00008509001_1|CHC_T00008509001}}
+
** [http://www.uniprot.org/uniprot/P20081 P20081]
−
{{#set: in pathway=PWY-7382}}
+
** [http://www.uniprot.org/uniprot/P62942 P62942]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P30412 P30412]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P24367 P24367]
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
** [http://www.uniprot.org/uniprot/P30405 P30405]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P28725 P28725]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P14088 P14088]
−
{{#set: reconstruction source=original_genome}}
+
** [http://www.uniprot.org/uniprot/Q08752 Q08752]
 +
** [http://www.uniprot.org/uniprot/Q26994 Q26994]
 +
** [http://www.uniprot.org/uniprot/P45877 P45877]
 +
** [http://www.uniprot.org/uniprot/Q9DCY1 Q9DCY1]
 +
** [http://www.uniprot.org/uniprot/P18203 P18203]
 +
** [http://www.uniprot.org/uniprot/O25982 O25982]
 +
** [http://www.uniprot.org/uniprot/O66105 O66105]
 +
** [http://www.uniprot.org/uniprot/Q9ZL49 Q9ZL49]
 +
** [http://www.uniprot.org/uniprot/P25007 P25007]
 +
** [http://www.uniprot.org/uniprot/Q9UDK1 Q9UDK1]
 +
** [http://www.uniprot.org/uniprot/P34791 P34791]
 +
** [http://www.uniprot.org/uniprot/Q9ZCB7 Q9ZCB7]
 +
** [http://www.uniprot.org/uniprot/P44837 P44837]
 +
** [http://www.uniprot.org/uniprot/P47480 P47480]
 +
** [http://www.uniprot.org/uniprot/P56420 P56420]
 +
** [http://www.uniprot.org/uniprot/P62935 P62935]
 +
** [http://www.uniprot.org/uniprot/P14832 P14832]
 +
** [http://www.uniprot.org/uniprot/P25334 P25334]
 +
** [http://www.uniprot.org/uniprot/P22011 P22011]
 +
** [http://www.uniprot.org/uniprot/P0AFL3 P0AFL3]
 +
** [http://www.uniprot.org/uniprot/P23869 P23869]
 +
** [http://www.uniprot.org/uniprot/P62937 P62937]
 +
** [http://www.uniprot.org/uniprot/P23284 P23284]
 +
** [http://www.uniprot.org/uniprot/P17742 P17742]
 +
** [http://www.uniprot.org/uniprot/P10255 P10255]
 +
** [http://www.uniprot.org/uniprot/P62936 P62936]
 +
** [http://www.uniprot.org/uniprot/P24525 P24525]
 +
** [http://www.uniprot.org/uniprot/P10111 P10111]
 +
** [http://www.uniprot.org/uniprot/P21568 P21568]
 +
** [http://www.uniprot.org/uniprot/P29820 P29820]
 +
** [http://www.uniprot.org/uniprot/P21569 P21569]
 +
** [http://www.uniprot.org/uniprot/P18253 P18253]
 +
** [http://www.uniprot.org/uniprot/P15425 P15425]
 +
** [http://www.uniprot.org/uniprot/P44499 P44499]
 +
** [http://www.uniprot.org/uniprot/P44830 P44830]
 +
** [http://www.uniprot.org/uniprot/P0A850 P0A850]
 +
** [http://www.uniprot.org/uniprot/Q9ZJH5 Q9ZJH5]
 +
** [http://www.uniprot.org/uniprot/P0ABZ6 P0ABZ6]
 +
** [http://www.uniprot.org/uniprot/Q9RXR9 Q9RXR9]
 +
** [http://www.uniprot.org/uniprot/Q9PNC4 Q9PNC4]
 +
** [http://www.uniprot.org/uniprot/P56989 P56989]
 +
** [http://www.uniprot.org/uniprot/P80698 P80698]
 +
** [http://www.uniprot.org/uniprot/Q9RRF0 Q9RRF0]
 +
** [http://www.uniprot.org/uniprot/Q9JQS5 Q9JQS5]
 +
** [http://www.uniprot.org/uniprot/Q57726 Q57726]
 +
** [http://www.uniprot.org/uniprot/P65762 P65762]
 +
** [http://www.uniprot.org/uniprot/O27393 O27393]
 +
** [http://www.uniprot.org/uniprot/Q9JZ74 Q9JZ74]
 +
** [http://www.uniprot.org/uniprot/Q46108 Q46108]
 +
** [http://www.uniprot.org/uniprot/Q9JU68 Q9JU68]
 +
** [http://www.uniprot.org/uniprot/Q9JUB5 Q9JUB5]
 +
** [http://www.uniprot.org/uniprot/P42458 P42458]
 +
** [http://www.uniprot.org/uniprot/P68106 P68106]
 +
** [http://www.uniprot.org/uniprot/Q9QUR7 Q9QUR7]
 +
** [http://www.uniprot.org/uniprot/P0AEM0 P0AEM0]
 +
** [http://www.uniprot.org/uniprot/Q00688 Q00688]
 +
** [http://www.uniprot.org/uniprot/Q7M511 Q7M511]
 +
** [http://www.uniprot.org/uniprot/P30404 P30404]
 +
** [http://www.uniprot.org/uniprot/Q7M541 Q7M541]
 +
** [http://www.uniprot.org/uniprot/P23285 P23285]
 +
** [http://www.uniprot.org/uniprot/P35627 P35627]
 +
** [http://www.uniprot.org/uniprot/P29117 P29117]
 +
** [http://www.uniprot.org/uniprot/P32472 P32472]
 +
** [http://www.uniprot.org/uniprot/Q06118 Q06118]
 +
** [http://www.uniprot.org/uniprot/P25719 P25719]
 +
** [http://www.uniprot.org/uniprot/P35176 P35176]
 +
** [http://www.uniprot.org/uniprot/Q40493 Q40493]
 +
** [http://www.uniprot.org/uniprot/P35137 P35137]
 +
** [http://www.uniprot.org/uniprot/Q53919 Q53919]
 +
** [http://www.uniprot.org/uniprot/Q40673 Q40673]
 +
** [http://www.uniprot.org/uniprot/Q40672 Q40672]
 +
** [http://www.uniprot.org/uniprot/P38911 P38911]
 +
** [http://www.uniprot.org/uniprot/P0A9L5 P0A9L5]
 +
** [http://www.uniprot.org/uniprot/Q48822 Q48822]
 +
** [http://www.uniprot.org/uniprot/Q42406 Q42406]
 +
** [http://www.uniprot.org/uniprot/P42693 P42693]
 +
** [http://www.uniprot.org/uniprot/Q99008 Q99008]
 +
** [http://www.uniprot.org/uniprot/Q8IIK8 Q8IIK8]
 +
** [http://www.uniprot.org/uniprot/Q27745 Q27745]
 +
** [http://www.uniprot.org/uniprot/Q41119 Q41119]
 +
** [http://www.uniprot.org/uniprot/Q43207 Q43207]
 +
** [http://www.uniprot.org/uniprot/Q06205 Q06205]
 +
** [http://www.uniprot.org/uniprot/Q8XCI0 Q8XCI0]
 +
** [http://www.uniprot.org/uniprot/P54985 P54985]
 +
** [http://www.uniprot.org/uniprot/Q9UNP9 Q9UNP9]
 +
** [http://www.uniprot.org/uniprot/Q7M0B2 Q7M0B2]
 +
** [http://www.uniprot.org/uniprot/Q10724 Q10724]
 +
** [http://www.uniprot.org/uniprot/Q38900 Q38900]
 +
** [http://www.uniprot.org/uniprot/Q38936 Q38936]
 +
** [http://www.uniprot.org/uniprot/Q38931 Q38931]
 +
** [http://www.uniprot.org/uniprot/P75454 P75454]
 +
** [http://www.uniprot.org/uniprot/P73789 P73789]
 +
** [http://www.uniprot.org/uniprot/Q8LDP4 Q8LDP4]
 +
** [http://www.uniprot.org/uniprot/Q25340 Q25340]
 +
** [http://www.uniprot.org/uniprot/O68129 O68129]
 +
** [http://www.uniprot.org/uniprot/O49605 O49605]
 +
** [http://www.uniprot.org/uniprot/P34790 P34790]
 +
** [http://www.uniprot.org/uniprot/O04843 O04843]
 +
** [http://www.uniprot.org/uniprot/O65104 O65104]
 +
** [http://www.uniprot.org/uniprot/Q39613 Q39613]
 +
** [http://www.uniprot.org/uniprot/Q41649 Q41649]
 +
** [http://www.uniprot.org/uniprot/Q41651 Q41651]
 +
** [http://www.uniprot.org/uniprot/P52014 P52014]
 +
** [http://www.uniprot.org/uniprot/P52017 P52017]
 +
** [http://www.uniprot.org/uniprot/P52018 P52018]
 +
** [http://www.uniprot.org/uniprot/P52013 P52013]
 +
** [http://www.uniprot.org/uniprot/Q9XXI7 Q9XXI7]
 +
** [http://www.uniprot.org/uniprot/P52009 P52009]
 +
** [http://www.uniprot.org/uniprot/P52015 P52015]
 +
** [http://www.uniprot.org/uniprot/P52011 P52011]
 +
** [http://www.uniprot.org/uniprot/Q18445 Q18445]
 +
** [http://www.uniprot.org/uniprot/O54168 O54168]
 +
** [http://www.uniprot.org/uniprot/Q9XA08 Q9XA08]
 +
** [http://www.uniprot.org/uniprot/P87051 P87051]
 +
** [http://www.uniprot.org/uniprot/O74729 O74729]
 +
** [http://www.uniprot.org/uniprot/O94273 O94273]
 +
** [http://www.uniprot.org/uniprot/O50586 O50586]
 +
** [http://www.uniprot.org/uniprot/O93778 O93778]
 +
** [http://www.uniprot.org/uniprot/Q38867 Q38867]
 +
** [http://www.uniprot.org/uniprot/Q9LY53 Q9LY53]
 +
** [http://www.uniprot.org/uniprot/Q96416 Q96416]
 +
** [http://www.uniprot.org/uniprot/Q96417 Q96417]
 +
** [http://www.uniprot.org/uniprot/O64456 O64456]
 +
** [http://www.uniprot.org/uniprot/Q9XF12 Q9XF12]
 +
** [http://www.uniprot.org/uniprot/Q9SKQ0 Q9SKQ0]
 +
** [http://www.uniprot.org/uniprot/Q9SP02 Q9SP02]
 +
** [http://www.uniprot.org/uniprot/P77949 P77949]
 +
** [http://www.uniprot.org/uniprot/O23727 O23727]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Peptidyl-prolyl cis-trans isomerase}}
 +
{{#set: common name=peptidyl-prolyl cis-trans isomerase}}
 +
{{#set: ec number=EC-5.2.1.8}}
 +
{{#set: gene associated=CHC_T00007958001_1|CHC_T00007696001_1|CHC_T00010100001|CHC_T00009539001_1|CHC_T00006888001_1|CHC_T00000384001_1|CHC_T00006996001_1|CHC_T00003429001_1|CHC_T00002787001_1|CHC_T00008963001_1|CHC_T00008726001|CHC_T00008963001|CHC_T00001971001_1|CHC_T00010100001_1|CHC_T00003821001_1|CHC_T00007913001_1|CHC_T00005215001_1|CHC_T00006404001_1|CHC_T00006301001_1|CHC_T00006154001_1|CHC_T00009552001|CHC_T00001335001_1|CHC_T00008599001|CHC_T00008420001|CHC_T00008322001_1|CHC_T00007310001_1|CHC_T00009539001|CHC_T00009116001|CHC_T00004338001_1|CHC_T00009552001_1|CHC_T00009116001_1}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:11, 23 May 2018

Reaction PEPTIDYLPROLYL-ISOMERASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Peptidyl-prolyl cis-trans isomerase
    • peptidyl-prolyl cis-trans isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a [protein]-L-proline (ω = 180)[c] <=> 1 a [protein]-L-proline (ω = 0)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PEPTIDYLPROLYL-ISOMERASE-RXN&oldid=13624"