Difference between revisions of "RXN-16380"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] == * direction: ** LEFT-TO-RIGHT * common name: ** long-chain-fatty-acid-CoA l...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** streptomycin biosynthesis
+
** long-chain-fatty-acid-CoA ligase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''2''' reactions found over '''18''' reactions in the full pathway
+
* With identifiers:
−
* [[MYO-INOSITOL-2-DEHYDROGENASE-RXN]]
+
** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[STEAROYL-COA]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
−
* [[PHOSPHOGLUCMUT-RXN]]
+
* With common name(s):
−
== Reaction(s) not found ==
+
** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 stearate[c] '''=>''' 1 stearoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.1.4.2-RXN 2.1.4.2-RXN]
+
 
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.27-RXN 2.4.2.27-RXN]
+
== Genes associated with this reaction  ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.50-RXN 2.6.1.50-RXN]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.56-RXN 2.6.1.56-RXN]
+
* Gene: [[CHC_T00009428001_1]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.33-RXN 2.7.7.33-RXN]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=3.1.3.40-RXN 3.1.3.40-RXN]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11097 RXN-11097]
+
* Gene: [[CHC_T00008500001_1]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11098 RXN-11098]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11099 RXN-11099]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9467 RXN-9467]
+
* Gene: [[CHC_T00008160001_1]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9469 RXN-9469]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9470 RXN-9470]
+
* Gene: [[CHC_T00009428001]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9471 RXN-9471]
+
** Source: [[annotation-original_genome]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=SCYLLO-INOSAMINE-KINASE-RXN SCYLLO-INOSAMINE-KINASE-RXN]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=STREPTOMYCIN-6-KINASE-RXN STREPTOMYCIN-6-KINASE-RXN]
+
* Gene: [[CHC_T00008811001]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=STREPTOMYCIN-6-PHOSPHATASE-RXN STREPTOMYCIN-6-PHOSPHATASE-RXN]
+
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008811001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
== Pathways  ==
 +
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-MAP:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
+
{{#set: common name=long-chain-fatty-acid-CoA ligase}}
−
{{#set: taxonomic range=TAX-201174}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: common name=streptomycin biosynthesis}}
+
{{#set: gene associated=CHC_T00009428001_1|CHC_T00008500001_1|CHC_T00008160001_1|CHC_T00009428001|CHC_T00008811001|CHC_T00008811001_1}}
−
{{#set: reaction found=2}}
+
{{#set: in pathway=PWY-5989}}
−
{{#set: reaction not found=18}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: completion rate=11.0}}
+
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:14, 23 May 2018

Reaction RXN-16380

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 stearate[c] => 1 stearoyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-16380&oldid=13768"