Difference between revisions of "PWY-6558"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE--TRNA-LIGASE-RXN ASPARAGINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE--TRNA-LIGASE-RXN ASPARAGINE--TRNA-LIGASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
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** asparaginyl-tRNA synthetase
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** heparan sulfate biosynthesis (late stages)
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.22 EC-6.1.1.22]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''13''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[ASN-tRNAs]][c] '''+''' 1 [[ASN]][c] '''=>''' 1 [[Charged-ASN-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* [[2.4.1.223-RXN]]
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* With common name(s):
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** 9 associated gene(s):
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** 1 ATP[c] '''+''' 1 tRNAasn[c] '''+''' 1 L-asparagine[c] '''=>''' 1 an L-asparaginyl-[tRNAasn][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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*** [[CHC_T00008553001_1]]
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*** [[CHC_T00005911001_1]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00009017001_1]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[CHC_T00008592001_1]]
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* [[CHC_T00008942001_1]]
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*** [[CHC_T00010079001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00010247001_1]]
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* [[CHC_T00008849001_1]]
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*** [[CHC_T00000714001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00008814001_1]]
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== Pathways  ==
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*** [[CHC_T00008436001_1]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** 1 reconstruction source(s) associated:
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** '''21''' reactions found over '''21''' reactions in the full pathway
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*** [[orthology-ectocarpus_siliculosus]]
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== Reconstruction information  ==
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== Reaction(s) not found ==
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* [[orthology]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.224-RXN 2.4.1.224-RXN]
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** [[pantograph]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.225-RXN 2.4.1.225-RXN]
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*** [[galdieria.sulphuraria]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.23-RXN 2.8.2.23-RXN]
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* [[annotation]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.29-RXN 2.8.2.29-RXN]
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** [[pathwaytools]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.30-RXN 2.8.2.30-RXN]
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*** [[original_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=5.1.3.17-RXN 5.1.3.17-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=HEPARITIN-SULFOTRANSFERASE-RXN HEPARITIN-SULFOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11557 RXN-11557]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11558 RXN-11558]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11562 RXN-11562]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11563 RXN-11563]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16327 RXN-16327]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11180 11180]
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{{#set: common name=heparan sulfate biosynthesis (late stages)}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03648 R03648]
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{{#set: total reaction=13}}
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* UNIPROT:
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{{#set: completion rate=8.0}}
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** [http://www.uniprot.org/uniprot/P39772 P39772]
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** [http://www.uniprot.org/uniprot/O57980 O57980]
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** [http://www.uniprot.org/uniprot/Q9V251 Q9V251]
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** [http://www.uniprot.org/uniprot/Q9CEK9 Q9CEK9]
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** [http://www.uniprot.org/uniprot/P47359 P47359]
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** [http://www.uniprot.org/uniprot/O51128 O51128]
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** [http://www.uniprot.org/uniprot/O83618 O83618]
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** [http://www.uniprot.org/uniprot/O58008 O58008]
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** [http://www.uniprot.org/uniprot/O96198 O96198]
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** [http://www.uniprot.org/uniprot/P54262 P54262]
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** [http://www.uniprot.org/uniprot/P75521 P75521]
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** [http://www.uniprot.org/uniprot/Q48966 Q48966]
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** [http://www.uniprot.org/uniprot/P0A8M0 P0A8M0]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=asparaginyl-tRNA synthetase}}
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{{#set: ec number=EC-6.1.1.22}}
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{{#set: gene associated=CHC_T00008942001_1|CHC_T00008849001_1}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Revision as of 15:20, 23 May 2018

Pathway PWY-6558

  • taxonomic range:
  • common name:
    • heparan sulfate biosynthesis (late stages)
  • Synonym(s):

Reaction(s) found

1 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-6558&oldid=14023"