Difference between revisions of "PPGPPMET-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** uroporphyrinogen methyltransfe...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 T...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
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** ppGpp biosynthesis
 
* Synonym(s):
 
* Synonym(s):
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** uroporphyrinogen methyltransferase
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** guanosine 3'-diphosphate 5'-diphosphate biosynthesis
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** uroporphyrinogen-III methyltransferase
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** adenosylmethionine-uroporphyrinogen III methyltransferase
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** S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase
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** SirA
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** CysG
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** uroporphyrin-III C-methyltransferase (incorrect)
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** S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''6''' reactions in the full pathway
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** 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c]
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* [[GDPKIN-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 precorrin-1[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 precorrin-2[c]
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*** [[CHC_T00009233001]]
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*** [[CHC_T00009258001]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00009233001_1]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[CHC_T00009258001_1]]
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* [[CHC_T00000927001_1]]
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** 4 reconstruction source(s) associated:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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== Pathways  ==
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*** [[orthology-arabidopsis_thaliana]]
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* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376]
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*** [[orthology-ectocarpus_siliculosus]]
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** '''2''' reactions found over '''13''' reactions in the full pathway
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*** [[orthology-galdieria.sulphuraria]]
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* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
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* [[PPGPPSYN-RXN]]
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** '''3''' reactions found over '''15''' reactions in the full pathway
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** 1 associated gene(s):
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* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
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*** [[CHC_T00003835001_1]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY-5196]], factor 430 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5196 PWY-5196]
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*** [[orthology-galdieria.sulphuraria]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[RXN0-6427]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* [[orthology]]:
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*** [[CHC_T00003835001_1]]
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** [[pantograph]]:
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** 1 reconstruction source(s) associated:
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*** [[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GDPPYPHOSKIN-RXN GDPPYPHOSKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GTPPYPHOSKIN-RXN GTPPYPHOSKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PPPGPPHYDRO-RXN PPPGPPHYDRO-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21972 21972]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
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{{#set: common name=ppGpp biosynthesis}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=guanosine 3'-diphosphate 5'-diphosphate biosynthesis}}
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{{#set: common name=uroporphyrinogen methyltransferase|uroporphyrinogen-III methyltransferase|adenosylmethionine-uroporphyrinogen III methyltransferase|S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase|SirA|CysG|uroporphyrin-III C-methyltransferase (incorrect)|S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)}}
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{{#set: reaction found=3}}
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{{#set: gene associated=CHC_T00000927001_1}}
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{{#set: total reaction=6}}
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{{#set: in pathway=PWY-7376|PWY-7377|PWY-5194|PWY-5196}}
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{{#set: completion rate=50.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Revision as of 16:31, 23 May 2018

Pathway PPGPPMET-PWY

  • taxonomic range:
  • common name:
    • ppGpp biosynthesis
  • Synonym(s):
    • guanosine 3'-diphosphate 5'-diphosphate biosynthesis

Reaction(s) found

3 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PPGPPMET-PWY&oldid=14547"