Difference between revisions of "CENTFERM-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12747 RXN-12747] == * direction: ** LEFT-TO-RIGHT * common name: ** 5-hydroxy-3-[(3aS,4S,5R,7aS...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-122...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12747 RXN-12747] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
 
* common name:
 
* common name:
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** 5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA 5-dehydrogenase
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** pyruvate fermentation to butanoate
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.145 EC-1.1.1.145]
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* Synonym(s):
 
* Synonym(s):
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** central fermentation pathway
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** acetobutylicum fermentation
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** pyruvate fermentation to butyrate
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''7''' reactions in the full pathway
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** 1 [[CPD-13754]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CPD-13755]][c]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA[c]
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*** [[CHC_T00008981001_1]]
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*** [[CHC_T00009349001_1]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00008981001]]
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Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
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* [[CHC_T00007359001_1]]
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*** [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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== Pathways  ==
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PWY-6944]], androstenedione degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6944 PWY-6944]
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*** [[orthology-galdieria.sulphuraria]]
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** '''2''' reactions found over '''15''' reactions in the full pathway
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* [[PYRUFLAVREDUCT-RXN]]
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== Reconstruction information  ==
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** 9 associated gene(s):
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* [[orthology]]:
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*** [[CHC_T00008442001_1]]
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** [[pantograph]]:
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*** [[CHC_T00003376001_1]]
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*** [[galdieria.sulphuraria]]
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*** [[CHC_T00001730001_1]]
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*** [[CHC_T00001454001_1]]
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*** [[CHC_T00003402001_1]]
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*** [[CHC_T00000866001_1]]
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*** [[CHC_T00009061001_1]]
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*** [[CHC_T00008758001_1]]
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*** [[CHC_T00000865001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-11662]]
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** 4 associated gene(s):
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*** [[CHC_T00008882001_1]]
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*** [[CHC_T00009422001_1]]
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*** [[CHC_T00008557001_1]]
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*** [[CHC_T00009349001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[RXN-11667]]
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** 3 associated gene(s):
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*** [[CHC_T00008882001_1]]
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*** [[CHC_T00009110001_1]]
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*** [[CHC_T00009349001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-arabidopsis_thaliana]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRATE-KINASE-RXN BUTYRATE-KINASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHATE-BUTYRYLTRANSFERASE-RXN PHOSPHATE-BUTYRYLTRANSFERASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: common name=5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA 5-dehydrogenase}}
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{{#set: taxonomic range=TAX-1239}}
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{{#set: ec number=EC-1.1.1.145}}
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{{#set: common name=pyruvate fermentation to butanoate}}
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{{#set: gene associated=CHC_T00007359001_1}}
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{{#set: common name=central fermentation pathway|acetobutylicum fermentation|pyruvate fermentation to butyrate}}
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{{#set: in pathway=PWY-6944}}
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{{#set: reaction found=4}}
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{{#set: reconstruction category=orthology}}
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{{#set: total reaction=7}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: completion rate=57.0}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Revision as of 15:45, 23 May 2018

Pathway CENTFERM-PWY

  • taxonomic range:
  • common name:
    • pyruvate fermentation to butanoate
  • Synonym(s):
    • central fermentation pathway
    • acetobutylicum fermentation
    • pyruvate fermentation to butyrate

Reaction(s) found

4 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CENTFERM-PWY&oldid=15196"