Difference between revisions of "RXN-17371"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-483 RXN66-483] == * direction: ** LEFT-TO-RIGHT * common name: ** long-chain-fatty-acid-CoA l...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17371 RXN-17371] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/6.3...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-483 RXN66-483] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17371 RXN-17371] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** long-chain-fatty-acid-CoA ligase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/6.3.2 EC-6.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-Me-Branched-234-Sat-FA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[2-Me-Branched-234-Sat-Fatty-Acyl-CoA]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[CPD-18777]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[CPD-18778]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 2-methyl branched 2,3,4-saturated fatty acid[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 a 2-methyl branched 2,3,4-saturated fatty acyl-CoA[c]
+
** 1 ATP[c] '''+''' 1 mycosporine glycine[c] '''+''' 1 L-serine[c] '''<=>''' 1 diphosphate[c] '''+''' 2 H+[c] '''+''' 1 shinorine[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00009428001_1]]
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* Gene: [[Scaffold115_53074_54093]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[manual-pathmodel_inference]]
−
* [[CHC_T00008811001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00009428001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00008500001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008811001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008160001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-387]], fatty acid &alpha;-oxidation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-387 PWY66-387]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[meneco]]
−
* [[annotation]]:
+
**** Comment: [[added for gapfilling]]
−
** [[pathwaytools]]:
+
* Category: [[manual]]
−
*** [[original_genome]]
+
** Source: [[manual-pathmodel_inference]]
 +
*** Comment: [[meneco;brawley2017;tblastn]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=long-chain-fatty-acid-CoA ligase}}
+
{{#set: ec number=EC-6.3.2}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: gene associated=Scaffold115_53074_54093}}
−
{{#set: gene associated=CHC_T00009428001_1|CHC_T00008811001|CHC_T00009428001|CHC_T00008500001_1|CHC_T00008811001_1|CHC_T00008160001_1}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY66-387}}
+
{{#set: reconstruction category=gap-filling|manual}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium|manual-pathmodel_inference}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
{{#set: reconstruction comment=added for gapfilling|meneco;brawley2017;tblastn}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 16:30, 23 May 2018

Reaction RXN-17371

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 mycosporine glycine[c] + 1 L-serine[c] <=> 1 diphosphate[c] + 2 H+[c] + 1 shinorine[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-17371&oldid=17321"