Difference between revisions of "CHC T00008425001"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPGPPSYN-RXN PPGPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
(Created page with "Category:Gene == Gene CHC_T00008425001 == * left end position: ** 192339 * transcription direction: ** POSITIVE * right end position: ** 192998 * centisome position: ** 96...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPGPPSYN-RXN PPGPPSYN-RXN] ==
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== Gene CHC_T00008425001 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 192339
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/3.1.7.2 EC-3.1.7.2]
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** POSITIVE
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* right end position:
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** 192998
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* centisome position:
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** 96.1176   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GSHTRAN-RXN]]
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** 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 ppGpp[c] '''+''' 1 H2O[c] '''=>''' 1 GDP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c]
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* Reaction: [[GST-RXN]]
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** Source: [[annotation-original_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-13673]]
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* [[CHC_T00003835001_1]]
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** Source: [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** Assignment: automated-name-match
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== Pathways ==
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* Reaction: [[RXN-15680]]
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* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
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** Source: [[annotation-original_genome]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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*** Assignment: automated-name-match
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== Reconstruction information  ==
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== Pathways associated ==
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* [[orthology]]:
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* [[PWY-7112]]
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** [[pantograph]]:
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* [[PWY-6842]]
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*** [[galdieria.sulphuraria]]
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* [[PWY-4061]]
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* [[PWY-7533]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=192339}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14253 14253]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=192998}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00336 R00336]
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{{#set: centisome position=96.1176    }}
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* UNIPROT:
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{{#set: reaction associated=GSHTRAN-RXN|GST-RXN|RXN-13673|RXN-15680}}
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** [http://www.uniprot.org/uniprot/Q9PN26 Q9PN26]
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{{#set: pathway associated=PWY-7112|PWY-6842|PWY-4061|PWY-7533}}
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** [http://www.uniprot.org/uniprot/Q9JT97 Q9JT97]
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** [http://www.uniprot.org/uniprot/P43811 P43811]
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** [http://www.uniprot.org/uniprot/P0AG24 P0AG24]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-3.1.7.2}}
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{{#set: gene associated=CHC_T00003835001_1}}
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{{#set: in pathway=PPGPPMET-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Latest revision as of 17:47, 23 May 2018

Gene CHC_T00008425001

  • left end position:
    • 192339
  • transcription direction:
    • POSITIVE
  • right end position:
    • 192998
  • centisome position:
    • 96.1176
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00008425001&oldid=18111"