Difference between revisions of "RXN-7682"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SER SER] == * smiles: ** C(O)C([N+])C(=O)[O-] * inchi key: ** InChIKey=MTCFGRXMJLQNBG-REOHCLBHS...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7682 RXN-7682] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SER SER] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7682 RXN-7682] ==
−
* smiles:
+
* direction:
−
** C(O)C([N+])C(=O)[O-]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
* ec number:
−
** InChIKey=MTCFGRXMJLQNBG-REOHCLBHSA-N
+
** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
−
* common name:
+
−
** L-serine
+
−
* molecular weight:
+
−
** 105.093   
+
 
* Synonym(s):
 
* Synonym(s):
−
** S
 
−
** serine
 
−
** ser
 
−
** L-ser
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-5641]]
+
* With identifiers:
−
* [[TRYPSYN-RXN]]
+
** 1 [[HYPOXANTHINE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[XANTHINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
−
* [[RXN0-2382]]
+
* With common name(s):
−
* [[SERINE--TRNA-LIGASE-RXN]]
+
** 1 hypoxanthine[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 xanthine[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
−
* [[BIOMASS-RXN]]
+
 
−
* [[RXN0-2161]]
+
== Genes associated with this reaction  ==
−
* [[5.1.1.18-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-15125]]
+
* Gene: [[CHC_T00000194001_1]]
−
* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[4.3.1.17-RXN]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
* [[SERINE-O-ACETTRAN-RXN]]
+
* Gene: [[CHC_T00006932001_1]]
−
== Reaction(s) known to produce the compound ==
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[RXN-14136]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
* [[RXN0-5114]]
+
* Gene: [[CHC_T00006216001_1]]
−
== Reaction(s) of unknown directionality ==
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[GLYOHMETRANS-RXN]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
* [[RXN-17371]]
+
== Pathways  ==
−
* [[GLYOHMETRANS-RXN-SER/THF//GLY/METHYLENE-THF/WATER.33.]]
+
* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
−
* [[RXN-1382]]
+
** '''3''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* CAS : 56-45-1
+
* RHEA:
−
* METABOLIGHTS : MTBLC33384
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24670 24670]
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6857581 6857581]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01768 R01768]
−
* HMDB : HMDB00187
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* LIGAND-CPD:
+
{{#set: ec number=EC-1.17.1.4}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00065 C00065]
+
{{#set: gene associated=CHC_T00000194001_1|CHC_T00006932001_1|CHC_T00006216001_1}}
−
* CHEBI:
+
{{#set: in pathway=P164-PWY|PWY-6596|SALVADEHYPOX-PWY}}
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=33384 33384]
+
{{#set: reconstruction category=orthology}}
−
* BIGG : ser__L
+
{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
−
{{#set: smiles=C(O)C([N+])C(=O)[O-]}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: inchi key=InChIKey=MTCFGRXMJLQNBG-REOHCLBHSA-N}}
+
−
{{#set: common name=L-serine}}
+
−
{{#set: molecular weight=105.093    }}
+
−
{{#set: common name=S|serine|ser|L-ser}}
+
−
{{#set: consumed by=RXN-5641|TRYPSYN-RXN|RXN0-2382|SERINE--TRNA-LIGASE-RXN|BIOMASS-RXN|RXN0-2161|5.1.1.18-RXN|RXN-15125|SERINE-C-PALMITOYLTRANSFERASE-RXN|4.3.1.17-RXN|SERINE-O-ACETTRAN-RXN}}
+
−
{{#set: produced by=RXN-14136|RXN0-5114}}
+
−
{{#set: consumed or produced by=GLYOHMETRANS-RXN|RXN-17371|GLYOHMETRANS-RXN-SER/THF//GLY/METHYLENE-THF/WATER.33.|RXN-1382}}
+

Revision as of 17:02, 23 May 2018

Reaction RXN-7682

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 hypoxanthine[c] + 1 NAD+[c] + 1 H2O[c] => 1 xanthine[c] + 1 H+[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 3 reactions found over 17 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 6 reactions found over 8 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II: SALVADEHYPOX-PWY
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-7682&oldid=18877"