Difference between revisions of "SERINE-C-PALMITOYLTRANSFERASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12398 RXN-12398] == * direction: ** LEFT-TO-RIGHT * common name: ** xyloglucan XXLG oligosaccha...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12398 RXN-12398] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** xyloglucan XXLG oligosaccharide β-galactosidase
+
** serine palmitoyltransferase, LCB1 subunit
 +
** serine palmitoyltransferase, LCB2 subunit
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
+
** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD-13376]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[PALMITYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 XXLG xyloglucan oligosaccharide[c] '''=>''' 1 XXXG xyloglucan oligosaccharide[c] '''+''' 1 D-galactopyranose[c]
+
** 1 H+[c] '''+''' 1 L-serine[c] '''+''' 1 palmitoyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 CO2[c] '''+''' 1 3-dehydrosphinganine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008606001_1]]
+
* Gene: [[CHC_T00008697001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00008905001_1]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00008326001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008697001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008326001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
+
* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P25045 P25045]
 +
** [http://www.uniprot.org/uniprot/O15270 O15270]
 +
** [http://www.uniprot.org/uniprot/P48241 P48241]
 +
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
 +
** [http://www.uniprot.org/uniprot/P40970 P40970]
 +
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
 +
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
 +
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=xyloglucan XXLG oligosaccharide β-galactosidase}}
+
{{#set: common name=serine palmitoyltransferase, LCB1 subunit}}
−
{{#set: ec number=EC-3.2.1.23}}
+
{{#set: common name=serine palmitoyltransferase, LCB2 subunit}}
−
{{#set: gene associated=CHC_T00008606001_1|CHC_T00008905001_1}}
+
{{#set: ec number=EC-2.3.1.50}}
−
{{#set: in pathway=PWY-6807}}
+
{{#set: gene associated=CHC_T00008697001_1|CHC_T00008326001|CHC_T00008697001|CHC_T00008326001_1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY3DJ-12|SPHINGOLIPID-SYN-PWY|PWY-5129}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 14:58, 9 January 2019

Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • serine palmitoyltransferase, LCB1 subunit
    • serine palmitoyltransferase, LCB2 subunit
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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