Difference between revisions of "PHOSPHAGLYPSYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=4-AMINO-BUTYRATE 4-AMINO-BUTYRATE] == * smiles: ** C(C[N+])CC([O-])=O * inchi key: ** InChIKey=...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=4-AMINO-BUTYRATE 4-AMINO-BUTYRATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHAGLYPSYN-RXN PHOSPHAGLYPSYN-RXN] ==
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* smiles:
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* direction:
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** C(C[N+])CC([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=BTCSSZJGUNDROE-UHFFFAOYSA-N
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* common name:
 
* common name:
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** 4-aminobutanoate
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** CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
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* molecular weight:
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** CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
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** 103.121   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.8.5 EC-2.7.8.5]
 
* Synonym(s):
 
* Synonym(s):
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** 4-NH2-but
 
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** 4-NH3-but
 
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** GABA
 
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** 4-aminobutyric acid
 
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** γ-aminobutyrate
 
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** 4-amino-n-butyric acid
 
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** γ-amino-n-butyric acid
 
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** gamma-amino-N-butyrate
 
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** g-amino-n-butyric acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN0-3942]]
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** 1 [[CDPDIACYLGLYCEROL]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''=>''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CMP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-14209]]
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** 1 a CDP-diacylglycerol[c] '''+''' 1 sn-glycerol 3-phosphate[c] '''=>''' 1 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate[c] '''+''' 1 H+[c] '''+''' 1 CMP[c]
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 +
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00009507001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009507001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008428001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008428001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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* [[PWY0-1545]], cardiolipin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1545 PWY0-1545]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-8 PWY4FS-8]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5668]], cardiolipin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5668 PWY-5668]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5269]], cardiolipin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5269 PWY-5269]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
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** '''5''' reactions found over '''16''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 56-12-2
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* RHEA:
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* METABOLIGHTS : MTBLC59888
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12593 12593]
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* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6992099 6992099]
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** [http://www.uniprot.org/uniprot/Q9JTH1 Q9JTH1]
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* HMDB : HMDB00112
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** [http://www.uniprot.org/uniprot/P46322 P46322]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P44528 P44528]
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** [http://www.genome.jp/dbget-bin/www_bget?C00334 C00334]
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** [http://www.uniprot.org/uniprot/P47360 P47360]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9PNM7 Q9PNM7]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=59888 59888]
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** [http://www.uniprot.org/uniprot/O25660 O25660]
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* BIGG : 4abut
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** [http://www.uniprot.org/uniprot/O51663 O51663]
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{{#set: smiles=C(C[N+])CC([O-])=O}}
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** [http://www.uniprot.org/uniprot/O67908 O67908]
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{{#set: inchi key=InChIKey=BTCSSZJGUNDROE-UHFFFAOYSA-N}}
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** [http://www.uniprot.org/uniprot/Q49839 Q49839]
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{{#set: common name=4-aminobutanoate}}
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** [http://www.uniprot.org/uniprot/P75520 P75520]
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{{#set: molecular weight=103.121    }}
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** [http://www.uniprot.org/uniprot/P74372 P74372]
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{{#set: common name=4-NH2-but|4-NH3-but|GABA|4-aminobutyric acid|γ-aminobutyrate|4-amino-n-butyric acid|γ-amino-n-butyric acid|gamma-amino-N-butyrate|g-amino-n-butyric acid}}
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** [http://www.uniprot.org/uniprot/Q48959 Q48959]
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{{#set: produced by=RXN0-3942}}
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** [http://www.uniprot.org/uniprot/P0ABF8 P0ABF8]
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{{#set: consumed or produced by=RXN-14209}}
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01801 R01801]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase}}
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{{#set: common name=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase}}
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{{#set: ec number=EC-2.7.8.5}}
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{{#set: gene associated=CHC_T00009507001_1|CHC_T00009507001|CHC_T00008428001|CHC_T00008428001_1}}
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{{#set: in pathway=PWY0-1545|PWY4FS-8|PWY-5668|PWY4FS-7|PWY-5269|PWY-7817}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 14:58, 9 January 2019

Reaction PHOSPHAGLYPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
    • CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1545, cardiolipin biosynthesis III: PWY0-1545
    • 1 reactions found over 3 reactions in the full pathway
  • PWY4FS-8, phosphatidylglycerol biosynthesis II (non-plastidic): PWY4FS-8
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5668, cardiolipin biosynthesis I: PWY-5668
    • 1 reactions found over 3 reactions in the full pathway
  • PWY4FS-7, phosphatidylglycerol biosynthesis I (plastidic): PWY4FS-7
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5269, cardiolipin biosynthesis II: PWY-5269
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7817, type I lipoteichoic acid biosynthesis (S. aureus): PWY-7817
    • 5 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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