Difference between revisions of "TRANS-RXN0-623"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
 
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN0-623 TRANS-RXN0-623] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** tRNA charging
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** long-chain-fatty-acid-CoA ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''21''' reaction(s) found
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* With identifiers:
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** [[ARGININE--TRNA-LIGASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD66-39]][e] '''+''' 1 [[PROTON]][e] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[PPI]][c]
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** [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
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* With common name(s):
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** [[ASPARAGINE--TRNA-LIGASE-RXN]]
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** 1 ATP[c] '''+''' 1 a 2,3,4-saturated fatty acid[e] '''+''' 1 H+[e] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 a 2,3,4-saturated fatty acyl CoA[c] '''+''' 1 diphosphate[c]
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** [[GLUTAMINE--TRNA-LIGASE-RXN]]
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** [[ALANINE--TRNA-LIGASE-RXN]]
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== Genes associated with this reaction  ==
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** [[METHIONINE--TRNA-LIGASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[GLURS-RXN]]
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* Gene: [[CHC_T00009428001]]
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** [[VALINE--TRNA-LIGASE-RXN]]
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** Source: [[annotation-original_genome]]
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** [[ASPARTATE--TRNA-LIGASE-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [[HISTIDINE--TRNA-LIGASE-RXN]]
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* Gene: [[CHC_T00008160001_1]]
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** [[TYROSINE--TRNA-LIGASE-RXN]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** [[CYSTEINE--TRNA-LIGASE-RXN]]
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* Gene: [[CHC_T00008811001]]
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** [[LEUCINE--TRNA-LIGASE-RXN]]
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** Source: [[annotation-original_genome]]
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** [[LYSINE--TRNA-LIGASE-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [[GLYCINE--TRNA-LIGASE-RXN]]
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* Gene: [[CHC_T00008500001_1]]
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** [[PHENYLALANINE--TRNA-LIGASE-RXN]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** [[ISOLEUCINE--TRNA-LIGASE-RXN]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** [[RXN-16165]]
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* Gene: [[CHC_T00008811001_1]]
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** [[SERINE--TRNA-LIGASE-RXN]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** [[PROLINE--TRNA-LIGASE-RXN]]
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* Gene: [[CHC_T00009428001_1]]
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** [[THREONINE--TRNA-LIGASE-RXN]]
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** Source: [[orthology-galdieria.sulphuraria]]
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== Reaction(s) not found ==
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** Source: [[orthology-ectocarpus_siliculosus]]
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* '''0''' reaction(s) not found
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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{{#set: common name=long-chain-fatty-acid-CoA ligase}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=CHC_T00009428001|CHC_T00008160001_1|CHC_T00008811001|CHC_T00008500001_1|CHC_T00008811001_1|CHC_T00009428001_1}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: in pathway=}}
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{{#set: common name=tRNA charging}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reaction found=21}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reaction not found=0}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:00, 9 January 2019

Reaction TRANS-RXN0-623

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a 2,3,4-saturated fatty acid[e] + 1 H+[e] + 1 coenzyme A[c] => 1 AMP[c] + 1 H+[c] + 1 a 2,3,4-saturated fatty acyl CoA[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=TRANS-RXN0-623&oldid=19694"