Difference between revisions of "APIGNAR-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD1F-115 CPD1F-115] == * smiles: ** CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC1(C(CCC=C1C)(C)...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD1F-115 CPD1F-115] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
−
* smiles:
+
* direction:
−
** CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC1(C(CCC=C1C)(C)C))C)C)C)C)C)C
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=WGIYGODPCLMGQH-GOXCNPTKSA-N
+
 
* common name:
 
* common name:
−
** δ-carotene
+
** Naringenin chalcone isomerase
−
* molecular weight:
+
* ec number:
−
** 536.882   
+
** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
−
** ε,ψ-carotene
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN1F-148]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
−
* [[RXN1F-147]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00008856001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
== Pathways  ==
 +
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5281230 5281230]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
−
* CHEMSPIDER:
+
* UNIPROT:
−
** [http://www.chemspider.com/Chemical-Structure.4444642.html 4444642]
+
** [http://www.uniprot.org/uniprot/P11650 P11650]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P11651 P11651]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=27705 27705]
+
** [http://www.uniprot.org/uniprot/P41088 P41088]
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/P14298 P14298]
−
** [http://www.genome.jp/dbget-bin/www_bget?C08586 C08586]
+
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
−
* HMDB : HMDB36925
+
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
−
{{#set: smiles=CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC1(C(CCC=C1C)(C)C))C)C)C)C)C)C}}
+
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
−
{{#set: inchi key=InChIKey=WGIYGODPCLMGQH-GOXCNPTKSA-N}}
+
** [http://www.uniprot.org/uniprot/P28012 P28012]
−
{{#set: common name=δ-carotene}}
+
** [http://www.uniprot.org/uniprot/P41089 P41089]
−
{{#set: molecular weight=536.882    }}
+
** [http://www.uniprot.org/uniprot/O81980 O81980]
−
{{#set: common name=ε,ψ-carotene}}
+
** [http://www.uniprot.org/uniprot/O22604 O22604]
−
{{#set: consumed by=RXN1F-148}}
+
** [http://www.uniprot.org/uniprot/O22651 O22651]
−
{{#set: produced by=RXN1F-147}}
+
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Naringenin chalcone isomerase}}
 +
{{#set: ec number=EC-5.5.1.6}}
 +
{{#set: gene associated=CHC_T00008856001_1}}
 +
{{#set: in pathway=PWY-6787|PWY1F-FLAVSYN|PWY-7397}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:02, 9 January 2019

Reaction APIGNAR-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Naringenin chalcone isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2',4,4',6'-tetrahydroxychalcone[c] => 1 (2S)-naringenin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 2 reactions found over 10 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=APIGNAR-RXN&oldid=19741"