Difference between revisions of "RXN-12726"

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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5647 PWY-5647] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** 2-nitrobenzoate degradation I
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** Cysteine synthase CYS1
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.47 EC-2.5.1.47]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''8''' reactions in the full pathway
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* With identifiers:
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* [[1.13.11.6-RXN]]
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** 1 [[ACETYLSERINE]][c] '''+''' 1 [[CPD-678]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[L-SELENOCYSTEINE]][c] '''+''' 1 [[ACET]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.32-RXN 1.2.1.32-RXN]
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** 1 O-acetyl-L-serine[c] '''+''' 1 hydrogen selenide[c] '''=>''' 1 H+[c] '''+''' 1 L-selenocysteine[c] '''+''' 1 acetate[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.1.1.77-RXN 4.1.1.77-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN AMINO-CARBOXYMUCONATE-SEMIALDEHYDE-RXN]
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== Genes associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-5654 PWY-5654]
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Genes have been associated with this reaction based on different elements listed below.
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-5654 PWY-5654]
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* Gene: [[CHC_T00008842001_1]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8846 RXN-8846]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8847 RXN-8847]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008705001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008705001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6936]], seleno-amino acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* UM-BBD-PWY : onb
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=Cysteine synthase CYS1}}
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{{#set: common name=2-nitrobenzoate degradation I}}
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{{#set: ec number=EC-2.5.1.47}}
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{{#set: reaction found=1}}
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{{#set: gene associated=CHC_T00008842001_1|CHC_T00008705001_1|CHC_T00008705001}}
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{{#set: reaction not found=8}}
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{{#set: in pathway=PWY-6936}}
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{{#set: completion rate=13.0}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:12, 9 January 2019

Reaction RXN-12726

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cysteine synthase CYS1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6936, seleno-amino acid biosynthesis: PWY-6936
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-12726&oldid=19978"