Difference between revisions of "RIBOFLAVIN-SYN-RXN"

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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** pyridoxal 5'-phosphate salvage II (plants)
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** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9]
 
* Synonym(s):
 
* Synonym(s):
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** vitamin B6 salvage (plants)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''8''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[3.1.3.74-RXN]]
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** 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[RIBOFLAVIN]][c] '''+''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c]
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* [[PMPOXI-RXN]]
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* With common name(s):
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* [[PNKIN-RXN]]
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** 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''+''' 1 H+[c] '''=>''' 1 riboflavin[c] '''+''' 1 5-amino-6-(D-ribitylamino)uracil[c]
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* [[PNPOXI-RXN]]
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* [[PYRAMKIN-RXN]]
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== Genes associated with this reaction  ==
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* [[PYRIDOXKIN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-14046]]
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* Gene: [[CHC_T00004285001_1]]
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* [[RXN-14181]]
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** Source: [[orthology-galdieria.sulphuraria]]
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== Reaction(s) not found ==
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXINE-4-DEHYDROGENASE-RXN PYRIDOXINE-4-DEHYDROGENASE-RXN]
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** Source: [[orthology-arabidopsis_thaliana]]
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== Pathways  ==
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* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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* RHEA:
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{{#set: common name=pyridoxal 5'-phosphate salvage II (plants)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
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{{#set: common name=vitamin B6 salvage (plants)}}
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* UNIPROT:
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{{#set: reaction found=8}}
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** [http://www.uniprot.org/uniprot/P11998 P11998]
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{{#set: reaction not found=9}}
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** [http://www.uniprot.org/uniprot/P16440 P16440]
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{{#set: completion rate=89.0}}
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** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
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** [http://www.uniprot.org/uniprot/O24854 O24854]
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** [http://www.uniprot.org/uniprot/O26237 O26237]
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** [http://www.uniprot.org/uniprot/P66037 P66037]
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** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
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** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
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** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
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** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
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** [http://www.uniprot.org/uniprot/P45273 P45273]
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** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
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** [http://www.uniprot.org/uniprot/O66529 O66529]
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** [http://www.uniprot.org/uniprot/Q58584 Q58584]
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** [http://www.uniprot.org/uniprot/O28856 O28856]
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** [http://www.uniprot.org/uniprot/Q01994 Q01994]
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** [http://www.uniprot.org/uniprot/P61714 P61714]
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** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
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** [http://www.uniprot.org/uniprot/P38145 P38145]
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** [http://www.uniprot.org/uniprot/Q55532 Q55532]
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** [http://www.uniprot.org/uniprot/P73527 P73527]
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** [http://www.uniprot.org/uniprot/Q44680 Q44680]
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** [http://www.uniprot.org/uniprot/Q44681 Q44681]
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** [http://www.uniprot.org/uniprot/P50854 P50854]
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** [http://www.uniprot.org/uniprot/P50856 P50856]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.5.1.9}}
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{{#set: gene associated=CHC_T00004285001_1}}
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{{#set: in pathway=PWY-6168|PWY-6167|RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:14, 9 January 2019

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 4 reactions found over 10 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RIBOFLAVIN-SYN-RXN&oldid=20014"