Difference between revisions of "GLYRIBONUCSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMIDPHOSDEHYD-RXN IMIDPHOSDEHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** imidazolegl...")
 
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMIDPHOSDEHYD-RXN IMIDPHOSDEHYD-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** imidazoleglycerol-phosphate dehydratase (IGPD)
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.19 EC-4.2.1.19]
+
** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[D-ERYTHRO-IMIDAZOLE-GLYCEROL-P]][c] '''=>''' 1 [[IMIDAZOLE-ACETOL-P]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-erythro-imidazole-glycerol-phosphate[c] '''=>''' 1 imidazole acetol-phosphate[c] '''+''' 1 H2O[c]
+
** 1 5-phospho-β-D-ribosylamine[c] '''+''' 1 ATP[c] '''+''' 1 glycine[c] '''=>''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008556001]]
+
* Gene: [[CHC_T00000892001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008556001_1]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pantograph]]-[[a.taliana]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
+
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[a.taliana]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11040 11040]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R03457 R03457]
+
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q58109 Q58109]
+
** [http://www.uniprot.org/uniprot/P07244 P07244]
−
** [http://www.uniprot.org/uniprot/P06633 P06633]
+
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
−
** [http://www.uniprot.org/uniprot/P10368 P10368]
+
** [http://www.uniprot.org/uniprot/P12039 P12039]
−
** [http://www.uniprot.org/uniprot/P06987 P06987]
+
** [http://www.uniprot.org/uniprot/P21872 P21872]
−
** [http://www.uniprot.org/uniprot/Q9PM76 Q9PM76]
+
** [http://www.uniprot.org/uniprot/P15640 P15640]
−
** [http://www.uniprot.org/uniprot/P44327 P44327]
+
** [http://www.uniprot.org/uniprot/P00967 P00967]
−
** [http://www.uniprot.org/uniprot/Q02134 Q02134]
+
** [http://www.uniprot.org/uniprot/P16340 P16340]
−
** [http://www.uniprot.org/uniprot/P64371 P64371]
+
** [http://www.uniprot.org/uniprot/P22102 P22102]
−
** [http://www.uniprot.org/uniprot/Q12578 Q12578]
+
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
−
** [http://www.uniprot.org/uniprot/P18787 P18787]
+
** [http://www.uniprot.org/uniprot/P43845 P43845]
−
** [http://www.uniprot.org/uniprot/P16247 P16247]
+
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
−
** [http://www.uniprot.org/uniprot/P28624 P28624]
+
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
−
** [http://www.uniprot.org/uniprot/P34041 P34041]
+
** [http://www.uniprot.org/uniprot/P20772 P20772]
−
** [http://www.uniprot.org/uniprot/Q02986 Q02986]
+
** [http://www.uniprot.org/uniprot/P26977 P26977]
−
** [http://www.uniprot.org/uniprot/P40374 P40374]
+
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
−
** [http://www.uniprot.org/uniprot/P48054 P48054]
+
** [http://www.uniprot.org/uniprot/P74232 P74232]
−
** [http://www.uniprot.org/uniprot/Q43072 Q43072]
+
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
−
** [http://www.uniprot.org/uniprot/Q9X7B9 Q9X7B9]
+
** [http://www.uniprot.org/uniprot/P52421 P52421]
−
** [http://www.uniprot.org/uniprot/O48932 O48932]
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=imidazoleglycerol-phosphate dehydratase (IGPD)}}
+
{{#set: ec number=EC-6.3.4.13}}
−
{{#set: ec number=EC-4.2.1.19}}
+
{{#set: gene associated=CHC_T00000892001_1}}
−
{{#set: gene associated=CHC_T00008556001|CHC_T00008556001_1}}
+
{{#set: in pathway=PWY-6122|PWY-6277|PWY-6121}}
−
{{#set: in pathway=HISTSYN-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=a.taliana}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Latest revision as of 15:17, 9 January 2019

Reaction GLYRIBONUCSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




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