Difference between revisions of "RXN-12490"

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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6952 PWY-6952] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12490 RXN-12490] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** glycerophosphodiester degradation
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[GLYCPDIESTER-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[CPD0-2244]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD0-2123]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15745 RXN-15745]
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** 1 NAD+[c] '''+''' 1 (S)-3-hydroxydecanoyl-CoA[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 3-oxodecanoyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00008882001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008557001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00009349001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009422001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6952 PWY-6952]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31188 31188]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=glycerophosphodiester degradation}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04743 R04743]
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{{#set: reaction found=1}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction not found=2}}
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{{#set: ec number=EC-1.1.1.35}}
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{{#set: completion rate=50.0}}
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{{#set: gene associated=CHC_T00008882001_1|CHC_T00008557001_1|CHC_T00009349001_1|CHC_T00009422001_1}}
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{{#set: in pathway=PWY-7094}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:22, 9 January 2019

Reaction RXN-12490

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 (S)-3-hydroxydecanoyl-CoA[c] => 1 H+[c] + 1 NADH[c] + 1 3-oxodecanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7094, fatty acid salvage: PWY-7094
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-12490&oldid=20188"