Difference between revisions of "RXN-14216"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14216 RXN-14216] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[COUMARATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[P-COUMAROYL-COA]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[DCTP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[DCDP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 4-coumarate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 4-coumaroyl-CoA[c]
+
** 1 H2O[c] '''+''' 1 dCTP[c] '''=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 dCDP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008472001_1]]
+
* Gene: [[CHC_T00003677001_1]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008160001_1]]
+
* Gene: [[CHC_T00001236001_1]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7046]], 4-coumarate degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6982]], umbelliferone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6982 PWY-6982]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6320]], phaselate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6320 PWY-6320]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
 
−
** '''3''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
 
−
** '''6''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[a.taliana]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19641 19641]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P31684 P31684]
 
−
** [http://www.uniprot.org/uniprot/P31685 P31685]
 
−
** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8]
 
−
** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7]
 
−
** [http://www.uniprot.org/uniprot/P17814 P17814]
 
−
** [http://www.uniprot.org/uniprot/P31687 P31687]
 
−
** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2]
 
−
** [http://www.uniprot.org/uniprot/P14912 P14912]
 
−
** [http://www.uniprot.org/uniprot/P14913 P14913]
 
−
** [http://www.uniprot.org/uniprot/P31686 P31686]
 
−
** [http://www.uniprot.org/uniprot/Q42524 Q42524]
 
−
** [http://www.uniprot.org/uniprot/Q42943 Q42943]
 
−
** [http://www.uniprot.org/uniprot/Q42982 Q42982]
 
−
** [http://www.uniprot.org/uniprot/P93360 P93360]
 
−
** [http://www.uniprot.org/uniprot/P93361 P93361]
 
−
** [http://www.uniprot.org/uniprot/O24146 O24146]
 
−
** [http://www.uniprot.org/uniprot/O48868 O48868]
 
−
** [http://www.uniprot.org/uniprot/O48869 O48869]
 
−
** [http://www.uniprot.org/uniprot/O81139 O81139]
 
−
** [http://www.uniprot.org/uniprot/O81140 O81140]
 
−
** [http://www.uniprot.org/uniprot/P41636 P41636]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-6.2.1.12}}
+
{{#set: gene associated=CHC_T00003677001_1|CHC_T00001236001_1}}
−
{{#set: gene associated=CHC_T00008472001_1|CHC_T00008160001_1}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-6920|PWY-6435|PWY1F-FLAVSYN|PWY-7046|PWY-6982|PWY-7397|PWY-6320|PWY-7398|PWY-5754|PWY-5135|PWY-361}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=a.taliana}}
 

Latest revision as of 16:24, 9 January 2019

Reaction RXN-14216

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 dCTP[c] => 1 H+[c] + 1 phosphate[c] + 1 dCDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-14216&oldid=20265"