Difference between revisions of "GPPSYN-RXN"

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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-501 PWY0-501] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
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* common name:
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** lipoate biosynthesis and incorporation I
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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  '''2''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[RXN0-947]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CPD-4211]][c] '''<=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
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* [[RXN0-949]]
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* With common name(s):
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== Reaction(s) not found ==
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** 1 isopentenyl diphosphate[c] '''+''' 1 dimethylallyl diphosphate[c] '''<=>''' 1 geranyl diphosphate[c] '''+''' 1 diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00005639001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00003042001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00004833001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00002263001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00002324001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00006851001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008377001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00000930001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008265001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways ==
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* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY0-501 PWY0-501]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
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{{#set: taxonomic range=TAX-33090}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P08524 P08524]
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.uniprot.org/uniprot/P05369 P05369]
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{{#set: common name=lipoate biosynthesis and incorporation I}}
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** [http://www.uniprot.org/uniprot/P14324 P14324]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P46376 P46376]
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{{#set: reaction not found=2}}
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** [http://www.uniprot.org/uniprot/Q45220 Q45220]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P49350 P49350]
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** [http://www.uniprot.org/uniprot/Q50891 Q50891]
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** [http://www.uniprot.org/uniprot/P49349 P49349]
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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** [http://www.uniprot.org/uniprot/P49351 P49351]
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** [http://www.uniprot.org/uniprot/P49352 P49352]
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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** [http://www.uniprot.org/uniprot/O24241 O24241]
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** [http://www.uniprot.org/uniprot/O24242 O24242]
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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** [http://www.uniprot.org/uniprot/P49353 P49353]
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** [http://www.uniprot.org/uniprot/O04882 O04882]
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** [http://www.uniprot.org/uniprot/O65004 O65004]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.5.1.1}}
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{{#set: gene associated=CHC_T00005639001_1|CHC_T00003042001_1|CHC_T00004833001_1|CHC_T00002263001_1|CHC_T00002324001_1|CHC_T00006851001_1|CHC_T00008377001_1|CHC_T00000930001_1|CHC_T00008265001_1}}
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{{#set: in pathway=PWY-5122|PWY-5123|PWY-7659|PWY-7709|PWY-7182|PWY-7410|PWY-6859|PWY-7102|PWY-7736|PWY-6383|PWY-7141}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:28, 9 January 2019

Reaction GPPSYN-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 dimethylallyl diphosphate[c] <=> 1 geranyl diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5122, geranyl diphosphate biosynthesis: PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7659, viridicatumtoxin biosynthesis: PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709, (3R)-linalool biosynthesis: PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7182, linalool biosynthesis I: PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7410, ipsdienol biosynthesis: PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7141, (3S)-linalool biosynthesis: PWY-7141
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=GPPSYN-RXN&oldid=20336"