Difference between revisions of "GPPSYN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2...") |
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** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| − | * [[PWY- | + | * [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122] |
| − | ** ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123] |
| − | ** '''3''' reactions found over ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
| + | * [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659] | ||
| + | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709] | * [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709] | ||
** '''1''' reactions found over '''2''' reactions in the full pathway | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| − | |||
| − | |||
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182] | * [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182] | ||
** '''1''' reactions found over '''2''' reactions in the full pathway | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| − | * [[PWY- | + | * [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410] |
| − | ** '''1''' reactions found over ''' | + | ** '''1''' reactions found over '''4''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859] |
| − | ** '''3''' reactions found over ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
| − | + | ||
| − | + | ||
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102] | * [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102] | ||
** '''3''' reactions found over '''6''' reactions in the full pathway | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736] | ||
| + | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383] | ||
| + | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141] | * [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141] | ||
** '''1''' reactions found over '''2''' reactions in the full pathway | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| − | |||
| − | |||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | *** Tool: [[pantograph]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408] | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408] | ||
| − | |||
| − | |||
* UNIPROT: | * UNIPROT: | ||
** [http://www.uniprot.org/uniprot/P08524 P08524] | ** [http://www.uniprot.org/uniprot/P08524 P08524] | ||
| Line 95: | Line 93: | ||
** [http://www.uniprot.org/uniprot/O04882 O04882] | ** [http://www.uniprot.org/uniprot/O04882 O04882] | ||
** [http://www.uniprot.org/uniprot/O65004 O65004] | ** [http://www.uniprot.org/uniprot/O65004 O65004] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658] | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
{{#set: ec number=EC-2.5.1.1}} | {{#set: ec number=EC-2.5.1.1}} | ||
{{#set: gene associated=CHC_T00005639001_1|CHC_T00003042001_1|CHC_T00004833001_1|CHC_T00002263001_1|CHC_T00002324001_1|CHC_T00006851001_1|CHC_T00008377001_1|CHC_T00000930001_1|CHC_T00008265001_1}} | {{#set: gene associated=CHC_T00005639001_1|CHC_T00003042001_1|CHC_T00004833001_1|CHC_T00002263001_1|CHC_T00002324001_1|CHC_T00006851001_1|CHC_T00008377001_1|CHC_T00000930001_1|CHC_T00008265001_1}} | ||
| − | {{#set: in pathway=PWY- | + | {{#set: in pathway=PWY-5122|PWY-5123|PWY-7659|PWY-7709|PWY-7182|PWY-7410|PWY-6859|PWY-7102|PWY-7736|PWY-6383|PWY-7141}} |
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
| − | {{#set: reconstruction source=orthology- | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 15:28, 9 January 2019
Contents
Reaction GPPSYN-RXN
- direction:
- REVERSIBLE
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 DELTA3-ISOPENTENYL-PP[c] + 1 CPD-4211[c] <=> 1 GERANYL-PP[c] + 1 PPI[c]
- With common name(s):
- 1 isopentenyl diphosphate[c] + 1 dimethylallyl diphosphate[c] <=> 1 geranyl diphosphate[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00005639001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00003042001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00004833001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00002263001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00002324001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00006851001_1
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00008377001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00000930001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00008265001_1
- Source: orthology-ectocarpus_siliculosus
Pathways
- PWY-5122, geranyl diphosphate biosynthesis: PWY-5122
- 1 reactions found over 1 reactions in the full pathway
- PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
- 3 reactions found over 3 reactions in the full pathway
- PWY-7659, viridicatumtoxin biosynthesis: PWY-7659
- 1 reactions found over 9 reactions in the full pathway
- PWY-7709, (3R)-linalool biosynthesis: PWY-7709
- 1 reactions found over 2 reactions in the full pathway
- PWY-7182, linalool biosynthesis I: PWY-7182
- 1 reactions found over 2 reactions in the full pathway
- PWY-7410, ipsdienol biosynthesis: PWY-7410
- 1 reactions found over 4 reactions in the full pathway
- PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
- 3 reactions found over 4 reactions in the full pathway
- PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
- 3 reactions found over 6 reactions in the full pathway
- PWY-7736, stellatic acid biosynthesis: PWY-7736
- 3 reactions found over 8 reactions in the full pathway
- PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
- 2 reactions found over 5 reactions in the full pathway
- PWY-7141, (3S)-linalool biosynthesis: PWY-7141
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
External links
- RHEA:
- UNIPROT:
- LIGAND-RXN:
