Difference between revisions of "RXN1F-151"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6955 PWY-6955] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6955 PWY-6955] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-151 RXN1F-151] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** lincomycin biosynthesis
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** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''1''' reaction(s) found
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* With identifiers:
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** [[RXN-5861]]
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** 1 [[CPD1F-126]][c] '''=>''' 1 [[CPD1F-129]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* '''7''' reaction(s) not found
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** 1 γ-carotene[c] '''=>''' 1 all-trans-β-carotene[c]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12852 RXN-12852]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12855 RXN-12855]
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== Genes associated with this reaction ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12851 RXN-12851]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12854 RXN-12854]
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* Gene: [[CHC_T00009401001_1]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12860 RXN-12860]
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** Source: [[orthology-arabidopsis_thaliana]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12859 RXN-12859]
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* Gene: [[CHC_T00009303001_1]]
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** [http://metacyc.org/META/NEW-IMAGE?object=STIZOLOBINATE-SYNTHASE-RXN STIZOLOBINATE-SYNTHASE-RXN]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00002318001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008813001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00003979001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00010245001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008616001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008663001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009499001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00008672001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009062001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00010004001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* Gene: [[CHC_T00009131001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
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== Pathways  ==
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* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: common name=lincomycin biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32242 32242]
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{{#set: reaction found=1}}
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* LIGAND-RXN:
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{{#set: reaction not found=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03824 R03824]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-5.5.1.19}}
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{{#set: gene associated=CHC_T00009401001_1|CHC_T00009303001_1|CHC_T00002318001_1|CHC_T00008813001_1|CHC_T00003979001_1|CHC_T00010245001_1|CHC_T00008616001_1|CHC_T00008663001_1|CHC_T00009499001_1|CHC_T00008672001_1|CHC_T00009062001_1|CHC_T00010004001_1|CHC_T00009131001_1}}
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{{#set: in pathway=PWY-5943}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:31, 9 January 2019

Reaction RXN1F-151

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 γ-carotene[c] => 1 all-trans-β-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5943, β-carotene biosynthesis: PWY-5943
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN1F-151&oldid=20403"